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Add basic project structure#1

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miltondp merged 34 commits intogreenelab:maingreenelab/ccc:mainfrom miltondp:basic-folder-structureCopy head branch name to clipboardAug 13, 2021

+1,018-1

Commits

Commits on Aug 9, 2021

• update README.md

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• add license

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• add flake8 configuration

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• add basic folder/file structure

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• add scripts for basic tasks

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• add Dockerfile and related scripts

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• update conda environment specification

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• run_nbs_server.sh: path fixes

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• update environment scripts

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Commits on Aug 10, 2021

• README.md: fix docker run calls

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• fix module import

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• environment/README.md: fixes

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• docker: improve script to create image

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• environment: fix R env installation scripts

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• add openpyxl dependency

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• environment: minor changes

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• add tests on basic modules

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• add lint workflow

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• fix code style issues with Black

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• fix flake8 issues

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• lint.yaml: change commit message

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• add pytest.yaml

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Commits on Aug 11, 2021

• pytest.yaml: add caching

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• pytest.yaml: add ms windows

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• add tests on basic modules

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• update environment/README.md

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• fix tests on windows

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• Update README.md

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• add code coverage

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• improve code coverage in conf.py

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• improve documentation and add minor changes

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• fix Dockerfile

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Commits on Aug 13, 2021

• environment/README.md: add notes

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• add @jjc2718 suggestions

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