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Add script to do exploratory data analysis on TCGA data #17

Merged
merged 12 commits into from
Aug 27, 2020
Merged

Add script to do exploratory data analysis on TCGA data #17

merged 12 commits into from
Aug 27, 2020

Commits on Aug 12, 2020

  1. add notebook to do some exploratory data analysis

    @jjc2718
    jjc2718 committed Aug 12, 2020
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Commits on Aug 25, 2020

  1. Merge branch 'classify_refactor' into explore_filters

    @jjc2718
    jjc2718 committed Aug 25, 2020
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  2. better phrasing/documentation for things

    @jjc2718
    jjc2718 committed Aug 25, 2020
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  3. Merge branch 'master' into explore_filters

    @jjc2718
    jjc2718 committed Aug 25, 2020
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  4. plot mutation proportions vs. number of mutations in TCGA top 50

    @jjc2718
    jjc2718 committed Aug 25, 2020
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  5. add better documentation to script for exploring data

    @jjc2718
    jjc2718 committed Aug 25, 2020
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Commits on Aug 26, 2020

  1. add PCA of most common cancer types to EDA script

    @jjc2718
    jjc2718 committed Aug 26, 2020
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  2. subset genes by MAD and take PCA, much more stable (unsurprisingly)

    @jjc2718
    jjc2718 committed Aug 26, 2020
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  3. clean up EDA script and add some documentation

    @jjc2718
    jjc2718 committed Aug 26, 2020
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  4. small phrasing change

    @jjc2718
    jjc2718 committed Aug 26, 2020
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Commits on Aug 27, 2020

  1. rename filtered dataframe and add some additional clarification

    @jjc2718
    jjc2718 committed Aug 27, 2020
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  2. rerun notebook to get rid of error

    @jjc2718
    jjc2718 committed Aug 27, 2020
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