install pandoc #9
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| name: Test package on s390x | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - s390x-testing | |
| workflow_dispatch: | |
| env: | |
| PKG: 'rhdf5' | |
| jobs: | |
| install-depdendencies: | |
| name: Install package dependencies | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| with: | |
| platforms: s390x | |
| image: docker.io/tonistiigi/binfmt:qemu-v8.1.5 | |
| - name: Make R library | |
| run: mkdir -p ${RUNNER_TEMP}/R-lib | |
| - name: Cache Dependencies | |
| id: cache-deps | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ runner.temp }}/R-lib | |
| key: R_lib-s390x-${{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| R_lib-s390x-${{ hashFiles('**/DESCRIPTION') }} | |
| R_lib-s390x- | |
| - name: Run the build process with Docker | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: s390x/r-base:latest | |
| options: | | |
| --platform linux/s390x | |
| -v ${{ runner.temp }}/R-lib:/R-lib | |
| -v ${{ github.workspace }}/../:/build | |
| --env R_LIBS_USER=/R-lib | |
| --env PKG=${{ env.PKG }} | |
| run: | | |
| uname -a | |
| echo "options(Ncpus=4L, timeout = 300)" >> ~/.Rprofile | |
| Rscript -e "install.packages(c('remotes', 'BiocManager'))" \ | |
| -e "library(remotes)" \ | |
| -e "pkgs <- remotes::dev_package_deps('/build/${PKG}', dependencies = TRUE)" \ | |
| -e 'BiocManager::install(pkgs$package, update = TRUE, ask = FALSE)' | |
| check-s390x: | |
| name: Test package on s390x | |
| runs-on: ubuntu-22.04 | |
| needs: install-depdendencies | |
| steps: | |
| - name: checkout | |
| uses: actions/checkout@v4 | |
| - name: Make R library | |
| run: mkdir -p ${RUNNER_TEMP}/R-lib | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| with: | |
| platforms: s390x | |
| image: docker.io/tonistiigi/binfmt:qemu-v8.1.5 | |
| - name: Cache Dependencies | |
| id: cache-deps | |
| uses: actions/cache@v4 | |
| with: | |
| path: ${{ runner.temp }}/R-lib | |
| key: R_lib-s390x-${{ hashFiles('**/DESCRIPTION') }} | |
| restore-keys: | | |
| R_lib-s390x-${{ hashFiles('**/DESCRIPTION') }} | |
| R_lib-s390x- | |
| - name: R CMD INSTALL | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: s390x/r-base:latest | |
| options: | | |
| --platform linux/s390x | |
| -v ${{ runner.temp }}/R-lib:/R-lib | |
| -v ${{ github.workspace }}/../:/build | |
| --env R_LIBS_USER=/R-lib | |
| --env PKG=${{ env.PKG }} | |
| --workdir /build | |
| run: | | |
| ls -l | |
| R CMD INSTALL ${PKG} &> ${PKG}.install-out.txt | |
| ls -l | |
| shell: bash | |
| - name: R CMD build | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: s390x/r-base:latest | |
| options: | | |
| --platform linux/s390x | |
| -v ${{ runner.temp }}/R-lib:/R-lib | |
| -v ${{ github.workspace }}/../:/build | |
| --env R_LIBS_USER=/R-lib | |
| --env PKG=${{ env.PKG }} | |
| --workdir /build | |
| run: | | |
| apt-get update && apt-get -y install pandoc | |
| ls -l "${R_LIBS_USER}" | |
| R CMD build --keep-empty-dirs --no-resave-data ${PKG} | |
| ls -l | |
| - name: R CMD check | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: s390x/r-base:latest | |
| options: | | |
| --platform linux/s390x | |
| -v ${{ runner.temp }}/R-lib:/R-lib | |
| -v ${{ github.workspace }}/../:/build | |
| --env R_LIBS_USER=/R-lib | |
| --env PKG=${{ env.PKG }} | |
| --workdir /build | |
| run: | | |
| ls -l | |
| apt-get update && apt-get -y install pandoc | |
| R CMD check --install=check:${PKG}.install-out.txt --library="${R_LIBS_USER}" --no-vignettes --timings ${PKG}*.tar.gz | |
| cat ${PKG}.install-out.txt | |
| ls -l | |
| - name: Build Package Binary | |
| uses: addnab/docker-run-action@v3 | |
| with: | |
| image: s390x/r-base:latest | |
| options: | | |
| --platform linux/s390x | |
| -v ${{ runner.temp }}/R-lib:/R-lib | |
| -v ${{ github.workspace }}/../:/build | |
| --env R_LIBS_USER=/R-lib | |
| --env PKG=${{ env.PKG }} | |
| --workdir /build | |
| run: | | |
| mkdir -p ${PKG}.buildbin-libdir | |
| R CMD INSTALL --build --library=${PKG}.buildbin-libdir ${PKG}*.tar.gz | |
| ls -l | |
| - uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: my-artifact | |
| path: | | |
| ~/**/*.tar.gz | |
| ~/**/*.install-out.txt | |
| ~/**/*.Rcheck | |
| if-no-files-found: warn | |