What's Changed
- Add resources to DKG by @nanglo123 in #344
- Implement new templates to model metabolism by @bgyori in #347
- Change new transition naming upon stratification by @bgyori in #349
- Add updated notebooks and exports for 2024.08 scenarios by @bgyori in #350
- Support expressions in parameters of distributions by @bgyori in #358
- Addition of ontology terms and subtree terms by @nanglo123 in #363
- Update dkg links in notebooks by @nanglo123 in #365
- Implement adding observables by pattern by @bgyori in #364
- Add obo pickled graphs to docker build by @nanglo123 in #367
- Fix sbml amr export by @nanglo123 in #368
- Only filter cities by minimum population by @nanglo123 in #373
- Update code to be compatible with Pydantic2 by @nanglo123 in #360
- Add all geonames admin2 regions by @nanglo123 in #375
- Propogate param_renaming_uses_strata_names argument from stratify endpoint to stratify method by @nanglo123 in #377
- Fix the epidemology DKG construction pipeline and docker container startup by @nanglo123 in #376
- Add "rdfs:subclassof" as a refinement relation by @nanglo123 in #380
- Fix unit processing for model ingestion by @nanglo123 in #381
- Update util.py by @djinnome in #379
- Speed up model composition by referring a singleton refinement closure by @nanglo123 in #383
- Generalize SBML initial condition extraction by @bgyori in #382
- Explicitly filter excluded controllers when considering cartesian product by @bgyori in #385
New Contributors
Full Changelog: 0.7.0...0.8.0
Contributors
djinnome, bgyori, and nanglo123