added comments

haddocking · Jul 27, 2022 · 333c248 · 333c248
1 parent c04d581
commit 333c248
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/src/cport/modules/scannet.py b/src/cport/modules/scannet.py
@@ -15,7 +15,6 @@
 
 # Total wait (seconds) = WAIT_INTERVAL * NUM_RETRIES
 WAIT_INTERVAL = 30  # seconds
-# any request should never take more than 15min so theoretical max is 90 retries
 NUM_RETRIES = 36
 
 
@@ -133,6 +132,7 @@ def parse_prediction(self, url=None, test_file=None):
             browser = ms.StatefulBrowser()
 
             browser.open(url)
+            # page contains PDB file as a string with results in b_factor column
             pdb_string = re.findall(
                 r"stringContainingTheWholePdbFile = (.*?);",
                 str(browser.page),
@@ -153,6 +153,7 @@ def parse_prediction(self, url=None, test_file=None):
             for atom in res:
                 b_fact = atom.get_bfactor()
 
+            # arbitrary value for active
             if b_fact >= 0.5:
                 prediction_dict["active"].append([res.id[1], b_fact])
             else: