Fixed wrong alignment format phylip->phylip-sequential

haddocking · Jan 28, 2021 · 2da728a · 2da728a
1 parent 55d2182
commit 2da728a
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/.gitignore b/.gitignore
@@ -109,3 +109,4 @@ test/gold/whiscy
 test/gold/parasmooth
 test/gold/consadjust
 bin/protdist/protdist
+sandbox/
diff --git a/whiscy_setup.py b/whiscy_setup.py
@@ -284,7 +284,7 @@ def write_to_fasta(output_fasta_file, sequence):
                 if os.path.basename(alignment_file_name) != phylip_file:
                     shutil.copyfile(alignment_file_name, phylip_file)
             else:
-                AlignIO.convert(alignment_file_name, alignment_format, phylip_file, "phylip")
+                AlignIO.convert(alignment_file_name, alignment_format, phylip_file, "phylip-sequential")
 
     if not os.path.exists(phylip_file):
         logger.error("PHYLIP sequence file {0} not found".format(phylip_file))