This repository holds all the code used in preparing the "Pathogen invasion history elucidates contemporary host pathogen dynamics" publication by Vredenburg et al. (2019; PLOS One)
- Scripts on pulling, preparing, cleaning up, and extracting data
- Bioclimactic and anthropogenic data from rasters provided by WorldClim and Venter et al. (2016); respectively
- Historical weather data from Oregon State University's PRISM program
- Hydrography data from U.S. Geological Survey's National Hydrography Dataset (NHD)
- Scripts on checking assumptions required for modeling and for performing both the MCMC Bayesian model of pathogen arrival and the logistic regression included in the paper