update slow5lib to v1.2-beta #119
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| name: C/C++ CI | |
| on: | |
| push: | |
| branches: [ '*' ] | |
| pull_request: | |
| branches: [ '*' ] | |
| jobs: | |
| ubuntu_14: | |
| name: ubuntu_14 | |
| runs-on: ubuntu-20.04 | |
| container: ubuntu:14.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: sudo apt-get update && sudo apt-get install -y zlib1g-dev gcc g++ autoconf automake make | |
| - name: env | |
| run: lsb_release -a && ldd --version && gcc --version && g++ --version | |
| - name: build | |
| run: make -j8 | |
| - name: test | |
| run: make test | |
| ubuntu_16: | |
| name: Ubuntu 16 | |
| runs-on: ubuntu-20.04 | |
| container: ubuntu:16.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: apt-get update && apt-get install -y zlib1g-dev gcc g++ autoconf automake make valgrind | |
| - name: build | |
| run: make -j8 | |
| - name: test | |
| run: make test | |
| - name: test mem | |
| run: scripts/test.sh mem | |
| ubuntu_18: | |
| name: Ubuntu 18 | |
| runs-on: ubuntu-20.04 | |
| container: ubuntu:18.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: apt-get update && apt-get install -y zlib1g-dev gcc g++ autoconf automake make | |
| - name: build | |
| run: make -j8 | |
| - name: test | |
| run: make test | |
| ubuntu_20: | |
| name: Ubuntu 20 | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: sudo apt-get update && sudo apt-get install zlib1g-dev | |
| - name: build-gcc | |
| run: make -j8 | |
| - name: test-gcc | |
| run: make test | |
| - name: build-clang | |
| run: make clean && make CC=clang -j8 | |
| - name: test-clang | |
| run: make test | |
| ubuntu_22: | |
| name: Ubuntu 22 | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: install packages | |
| run: sudo apt-get update && sudo apt-get install zlib1g-dev | |
| - name: build | |
| run: make -j8 | |
| - name: test | |
| run: make test | |
| ubuntu_20_icc: | |
| name: Ubuntu 20 icc | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| submodules: recursive | |
| - name: Intel Apt repository | |
| timeout-minutes: 1 | |
| run: | | |
| wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB | |
| sudo apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB | |
| rm GPG-PUB-KEY-INTEL-SW-PRODUCTS-2023.PUB | |
| echo "deb https://apt.repos.intel.com/oneapi all main" | sudo tee /etc/apt/sources.list.d/oneAPI.list | |
| sudo apt-get update | |
| - name: install packages | |
| run: sudo apt-get install -y zlib1g-dev libzstd-dev intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic | |
| - name: Setup Intel oneAPI environment | |
| run: | | |
| source /opt/intel/oneapi/setvars.sh | |
| printenv >> $GITHUB_ENV | |
| - name: build | |
| run: make CC=icc -j8 | |
| - name: test | |
| run: make test | |
| os_x_11: | |
| name: OSX 11 | |
| runs-on: macos-11 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: build | |
| run: make -j8 | |
| - name: test | |
| run: make test | |
| arm64: | |
| name: ubuntu arm | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: docker run --rm --privileged multiarch/qemu-user-static:register --reset | |
| - uses: docker://multiarch/ubuntu-core:arm64-bionic | |
| with: | |
| args: 'uname -a' | |
| - uses: actions/checkout@v1 | |
| - uses: docker://multiarch/ubuntu-core:arm64-bionic | |
| with: | |
| args: > | |
| bash -c "apt-get update && | |
| apt-get install -y zlib1g-dev gcc make && | |
| ldd --version && gcc --version && | |
| make && make test |