update help

hasindu2008 · Aug 23, 2024 · ff43ea8 · ff43ea8
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diff --git a/docs/man.md b/docs/man.md
@@ -10,7 +10,7 @@ Basic options in *squigulator* are as below:
 - `-t INT`: Number of threads [default: 8]
 - `-h`:  help
 - `--ideal`: To generate perfect signals with no noise. See example [here](img/ideal.svg).
-- `--full-contigs`: generate a complete raw signal per each contig in the input reference genome (incompatible with `-n` and `-r`).
+- `--full-contigs`: generate a complete raw signal per each contig in the input reference genome or each sequence in the input sequences (incompatible with `-n` and `-r`).
 - `--version`: print version
 - `--verbose INT`:  verbosity level [default: 4]
 

diff --git a/src/sim.c b/src/sim.c
@@ -730,7 +730,7 @@ static void print_help(FILE *fp_help, opt_t opt, profile_t p, int64_t nreads) {
     fprintf(fp_help,"   --ideal                    generate ideal signals with no noise\n");
     fprintf(fp_help,"   --version                  print version\n");
     fprintf(fp_help,"   --verbose INT              verbosity level [%d]\n",(int)get_log_level());
-    fprintf(fp_help,"   --full-contigs             generate signals for complete contigs (incompatible with -n, -r and -n)\n");
+    fprintf(fp_help,"   --full-contigs             generate signals for complete contigs/sequences in the input (incompatible with -n, -r & -n)\n");
 
     fprintf(fp_help,"\nadvanced options:\n");
     fprintf(fp_help,"   -K INT                     batch size (max number of reads created at once) [%d]\n",opt.batch_size);