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HIMSR Lab

The Human Immune Monitoring Shared Resource at CU | AMC

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  1. CU-CellSeg CU-CellSeg Public

    Cell segmentation of multi-channel images

    ImageJ Macro 4

  2. CU-IScore CU-IScore Public

    IHC scoring of multi-channel images

    ImageJ Macro 1

  3. CU-PhenoNorm CU-PhenoNorm Public

    ImageJ Macro 1

  4. CU-HIMSR CU-HIMSR Public

    A collection of tools provided by HIMSR

    Python

  5. CSV-to-FCS CSV-to-FCS Public archive

    Forked from sydneycytometry/CSV-to-FCS

    Short scripts for converting CSV/TXT files into FCS files, and vise versa.

    R

  6. phenoptrExamples phenoptrExamples Public archive

    Forked from akoyabio/phenoptrExamples

    Example data for use with the phenoptr package

    R

Repositories

Showing 10 of 16 repositories
  • CU-HIMSR Public

    A collection of tools provided by HIMSR

    himsr-lab/CU-HIMSR’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Sep 25, 2024
  • mibilib Public archive Forked from ionpath/mibilib

    Python client for IONpath MIBItracker API, plus utility functions for working with MIBItiff images.

    himsr-lab/mibilib’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 8 0 0 Updated Jul 31, 2024
  • phenoptrReports Public archive Forked from akoyabio/phenoptrReports

    Create analysis reports from inForm data.

    himsr-lab/phenoptrReports’s past year of commit activity
    R 0 Zlib 7 0 0 Updated Jul 31, 2024
  • phenoptr Public archive Forked from akoyabio/phenoptr

    Helper functions for working with inForm data.

    himsr-lab/phenoptr’s past year of commit activity
    R 0 Zlib 11 0 0 Updated Jul 31, 2024
  • UpSetR Public Forked from hms-dbmi/UpSetR

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    himsr-lab/UpSetR’s past year of commit activity
    R 0 162 0 0 Updated Feb 6, 2024
  • openxlsx Public Forked from ycphs/openxlsx

    openxlsx - a fast way to read and write complex xslx files

    himsr-lab/openxlsx’s past year of commit activity
    R 0 76 0 0 Updated Feb 4, 2024
  • CU-PhenoNorm Public
    himsr-lab/CU-PhenoNorm’s past year of commit activity
    ImageJ Macro 1 0 0 0 Updated Jul 25, 2023
  • CU-CellSeg Public

    Cell segmentation of multi-channel images

    himsr-lab/CU-CellSeg’s past year of commit activity
    ImageJ Macro 4 GPL-3.0 0 0 0 Updated May 8, 2023
  • CU-MacroLibrary Public

    ImageJ2 macro library with variables and functions

    himsr-lab/CU-MacroLibrary’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Apr 28, 2023
  • CU-IScore Public

    IHC scoring of multi-channel images

    himsr-lab/CU-IScore’s past year of commit activity
    ImageJ Macro 1 GPL-3.0 0 0 0 Updated Apr 26, 2023
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