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@hubmapconsortium

HuBMAP Consortium

This is the GitHub organization for repos related to the work of the HuBMAP Consortium.

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  1. entity-api entity-api Public

    A set of web service calls to return information about HuBMAP entities

    Python 3 1

  2. gateway gateway Public

    Custom gateway service with auth check for APIs and file assets not hosted with AWS API Gateway

    Python

  3. search-api search-api Public

    HuBMAP search service and associated pieces to create an index

    Python 2 2

  4. portal-ui portal-ui Public

    HuBMAP Data Portal front end

    TypeScript 12 2

  5. ingest-ui ingest-ui Public

    HuBMAP Data Ingest Portal

    JavaScript 4

  6. ingest-pipeline ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    Python 4 5

Repositories

Showing 10 of 180 repositories
  • dataset-metadata-spreadsheet Public

    This repository stores all the next-generation dataset metadata specification produced by the Data Coordination Working Group (DCWG). Every distinct folder corresponds to a particular assay or tissue sample used to produce the dataset.

    hubmapconsortium/dataset-metadata-spreadsheet’s past year of commit activity
    1 MIT 0 4 0 Updated Mar 8, 2025
  • hra-ui Public

    HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)

    hubmapconsortium/hra-ui’s past year of commit activity
    TypeScript 4 MIT 3 98 7 Updated Mar 7, 2025
  • portal-ui Public

    HuBMAP Data Portal front end

    hubmapconsortium/portal-ui’s past year of commit activity
    TypeScript 12 MIT 2 200 32 Updated Mar 7, 2025
  • ingest-validation-tests Public
    hubmapconsortium/ingest-validation-tests’s past year of commit activity
    Python 0 0 4 1 Updated Mar 7, 2025
  • ingest-pipeline Public

    Data ingest pipeline(s) for QA/metadata etl/post-processing

    hubmapconsortium/ingest-pipeline’s past year of commit activity
    Python 4 MIT 5 79 10 Updated Mar 7, 2025
  • ingest-validation-tools Public

    HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

    hubmapconsortium/ingest-validation-tools’s past year of commit activity
    Python 8 MIT 18 41 8 Updated Mar 7, 2025
  • user-templates-api Public
    hubmapconsortium/user-templates-api’s past year of commit activity
    Python 0 MIT 3 3 1 Updated Mar 7, 2025
  • salmon-rnaseq Public

    scRNA-seq pipeline using Salmon for quantification

    hubmapconsortium/salmon-rnaseq’s past year of commit activity
    Python 4 GPL-3.0 6 5 4 Updated Mar 7, 2025
  • entity-python-sdk Public

    SDK to access Entity API

    hubmapconsortium/entity-python-sdk’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 7, 2025
  • ingest-ui Public

    HuBMAP Data Ingest Portal

    hubmapconsortium/ingest-ui’s past year of commit activity
    JavaScript 4 MIT 0 100 (1 issue needs help) 2 Updated Mar 6, 2025
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