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tutorial to follow #26

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sailseem opened this issue Mar 29, 2022 · 1 comment
Open

tutorial to follow #26

sailseem opened this issue Mar 29, 2022 · 1 comment

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@sailseem
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Dear developer,

Is there any tutorials to follow to run this codex-based imaging pipeline? Thanks!
@VasylVaskivskyi
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Hi @sailseem , sorry I didn't notice your open issue. We are currently reworking some parts of the pipeline as well as stadardizing the input metadata and data structure. These changes should simplify usage of the pipeline.
The new version of the pipeline should be release some time in May. After that we can make a tutorial with a small dataset.
If you really need to use the pipeline right now, the best thing would be to organize the data and metadata according to what is described in the README file and metadata_examples folder.

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@VasylVaskivskyi @sailseem