Fix score_connection not extracting maximum frame in overlapping case 2 when in training mode
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…se 2 when in training mode
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Hi again!
While refactoring the Pyrodigal code thanks to @jhahnfeld and @oschwengers, I noticed that the part of the
score_connectionfunction that is supposed to extract the frame with the maximum score was not actually extracting the maximum one while in training mode. This can change the predictions, for instance onGCF_000067165the fixes causes a gene to start 160bp before what Prodigal actually predicts.I'm not actually sure whether this is intended, but if it's not, here is a bugfix.