Enable many more Ruff linter rules

...and switch from an opt-in to an opt-out strategy where we enable ALL
rules and then disable certain specific rules or sets of rules. This
means that when new versions of Ruff come out new rules will be enabled
by default.

Slack discussion: https://hypothes-is.slack.com/archives/C1MA4E9B9/p1737635626518379

_shared/project/pyproject.toml

@@ -72,49 +72,9 @@ ignore = [
 {% if include_exists("ruff/lint/ignore") %}
 {{ include("ruff/lint/ignore", indent=4) -}}
 {% else %}
-    "UP",    # pyupgrade
-    "YTT",   # flake8-2020 (checks for misuse of sys.version or sys.version_info
     "ANN",   # flake8-annotations (checks for absence of type annotations on functions)
-    "ASYNC", # flake8-async (checks for asyncio-related problems)
-    "S",     # flake8-bandit (checks for security issues)
-    "FBT",   # flake8-boolean-trap (checks for the "boolean trap" anti-pattern)
-    "B",     # flake8-bugbear (checks for bugs and design problems)
-    "A",     # flake8-builtins (checks for builtins being overridden)
     "CPY",   # flake8-copyright (checks for missing copyright notices)
-    "C4",    # flake8-comprehensions (helps write better list/set/dict comprehensions)
-    "DTZ",   # flake8-datetimez (checks for usages of unsafe naive datetime class)
-    "T10",   # flake8-debugger (checks for set traces etc)
-    "EM",    # flake8-errmsg (checks for error message formatting issues)
-    "EXE",   # flake8-executable (checks for incorrect executable permissions and shebangs)
-    "FA",    # flake8-future-annotations (checks for missing from __future__ import annotations)
-    "ISC",   # flake8-implicit-str-concat (checks for style problems with string literal concatenation)
-    "ICN",   # flake8-import-conventions (checks for unconventional imports and aliases)
-    "LOG",   # flake8-logging (checks for issues with using the logging module)
-    "G",     # flake8-logging-format (enforce usage of `extra` in logging calls)
-    "INP",   # flake8-no-pep420 (checks for missing __init__.py files)
-    "PIE",   # flake8-pie (miscellaneous)
-    "T20",   # flake8-print (checks for print and pprint statements)
-    "PT",    # flake8-pytest-style (checks for common pytest style and consistency issues)
-    "RSE",   # flake8-raise (checks for issues with raising exceptions)
-    "RET",   # flake8-return (checks for issues with return values)
-    "SLOT",  # flake8-slots (requires __slots__ in subclasses of immutable types)
-    "SIM",   # flake8-simplify (lots of code simplification checks)
-    "TID",   # flake8-tidy-imports (checks for issues with imports)
-    "TC",    # flake8-type-checking (checks for type checking imports that aren't in TYPE_CHECKING blocks)
-    "ARG",   # flake8-unused-arguments (checks for unused arguments)
-    "PTH",   # flake8-use-pathlib (checks for cases with pathlib could be used but isn't)
-    "TD",    # flake8-todos (enforces good style for "# TODO" comments)
-    "FIX",   # flake8-fixme (checks for FIXMEs, TODOs, HACKs, etc)
-    "ERA",   # eradicate (checks for commented-out code)
-    "PGH",   # pygrep-hooks (miscellaneous)
-    "PL",    # pylint (miscellaneous rules from pylint)
-    "TRY",   # tryceratops (various try/except-related checks)
-    "FLY",   # flynt (checks for old-style %-formatted strings)
-    "PERF",  # perflint (checks for performance anti-patterns)
-    "FURB",  # refurb (various "refurbishing and modernizing" checks)
-    "DOC",   # pydoclint (docstring checks)
-    "RUF",   # Ruff-specific rules
-    "COM",   # flake8-commas (we used a code formatter so we don't need a linter to check this)
+    "COM",   # flake8-commas (we use a code formatter so we don't need a linter to check this)
     "D100","D101","D102","D103","D104","D105","D106","D107", # Missing docstrings.
     "D202", # "No blank lines allowed after function docstring" conflicts with the Ruff code formatter.
     # "Multi-line docstring summary should start at the first line" (D212)
@@ -153,10 +113,20 @@ ignore = [
     "PLR0913", # Too many arguments. Tests often have lots of arguments.
     "PLR0917", # Too many positional arguments. Tests often have lots of arguments.
     "PLR0904", # Too many public methods. Test classes often have lots of test methods.
+    "S101", # Use of `assert` detected.
+{% if include_exists("ruff/lint/per_file_ignores/tests/tail") %}
+{{ include("ruff/lint/per_file_ignores/tests/tail", indent=4) -}}
+{% endif %}
 ]
 "__init__.py" = [
     "F401", # Ignore unused import errors on __init__ files to avoid having to add either a noqa stament or an __all__ declaration.
 ]
+"{{ cookiecutter.package_name }}/migrations/*" = [
+    "INP001",
+]
+"bin/*" = [
+    "INP001",
+]
 {% if include_exists("ruff/lint/per_file_ignores/tail") %}
 {{ include("ruff/lint/per_file_ignores/tail") -}}
 {% endif %}