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Single-cell RNA-seq introduction course

This course covers the basics of single-cell RNA-seq analysis. This material was meant to be continuously improved by the students from the Dalmolin Systems Biology Group.

This book is based on the following references:

Install R packages using conda or mamba

Note the environment.yml file. It has a list of R packages that are going to be used in this course. Install them by:

conda env create -f environment.yml

Activate the intro-single-cell environment:

conda activate intro-single-cell

Download the data

In your machine, download this folder and extract it to the same location of the course folder.

Datasets to practice

List of datasets to practice: link

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Introduction to single-cell RNA-seq analysis

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