General framework to organize data, methods, and results used in reproducible scientific analyses. A TAF analysis consists of four scripts (data.R, model.R, output.R, report.R) that are run sequentially. Each script starts by reading files from a previous step and ends with writing out files for the next step.
Convenience functions are provided to version control the required data and software, run analyses, clean residues from previous runs, manage files, manipulate tables, and produce figures. With a focus on stability and reproducible analyses, the TAF package comes with no dependencies.
TAF forms a base layer for the icesTAF package and other scientific applications.
The package can be installed from CRAN
using the install.packages command:
install.packages("TAF")For a summary of the package:
library(TAF)
?TAFICES Transparent Assessment Framework:
The package is developed openly on GitHub.
Feel free to open an issue there if you encounter problems or have suggestions for future versions.
The current development version can be installed using:
library(remotes)
install_github("ices-tools-prod/TAF")