Imagen MRI data processing

freesurfer

Segmentation of structural MRI data with FreeSurfer.

tbss_dti

Preprocessing of DTI data with mrtrix, dtitk, ants and fsl (current version).

fsl_dti

Preprocessing of DTI data with fsl (old version).

onsets_contrasts

From CSV behavioral files to onsets.

rsfMRI_preprocessing

Preprocessing of resting-state fMRI data with FSL and ANTS.

Obsolete FU2 processing code

spm_new_segment_FU2

Segmentation of baseline and FU2 structural MRI data with SPM.

spm_preprocessing_FU2

Preprocessing of baseline and FU2 task-based fMRI data with SPM.

spm_first_level_FU2

1st level processing of baseline and FU2 task-based fMRI data with SPM.