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imodpasteur

Imaging and Modeling lab

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  1. lutorpy lutorpy Public

    Forked from scoder/lupa

    Use torch in python for deep learning.

    Python 233 28

  2. ANNA-PALM ANNA-PALM Public

    Accelerating Single Molecule Localization Microscopy with Deep Learning

    Python 50 14

  3. ZOLA-3D ZOLA-3D Public

    Zernike Optimized Localization Algorithm for 3D single molecule localizations

    Java 17 3

  4. Brightfield-Drift-Correction-3D Brightfield-Drift-Correction-3D Public

    Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!

    Python 10

  5. keras keras Public

    Forked from keras-team/keras

    Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano and TensorFlow.

    Python 7 3

  6. pySPIRALTAP pySPIRALTAP Public

    Sparse Poisson Intensity Reconstruction ALgorithms

    Jupyter Notebook 7 5

Repositories

Showing 10 of 24 repositories
  • ShareLoc.XYZ Public

    A platform for sharing localization microscopy data.

    imodpasteur/ShareLoc.XYZ’s past year of commit activity
    JavaScript 3 MIT 2 22 16 Updated Jan 30, 2025
  • shareloc-collection Public

    RDF Collection for ShareLoc.XYZ

    imodpasteur/shareloc-collection’s past year of commit activity
    Python 2 0 0 1 Updated Nov 26, 2024
  • Sabate_et_al_TAD_Anchors Public

    Python scripts to analyze loop extrusion from microscopy images and simulations

    imodpasteur/Sabate_et_al_TAD_Anchors’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 30, 2024
  • Brightfield-Drift-Correction-3D Public

    Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!

    imodpasteur/Brightfield-Drift-Correction-3D’s past year of commit activity
    Python 10 MIT 0 1 0 Updated Jun 22, 2023
  • ANNA-PALM Public

    Accelerating Single Molecule Localization Microscopy with Deep Learning

    imodpasteur/ANNA-PALM’s past year of commit activity
    Python 50 14 12 2 Updated Mar 24, 2023
  • shareloc-utils Public

    Utility tools for ShareLoc.XYZ

    imodpasteur/shareloc-utils’s past year of commit activity
    Python 0 MIT 0 1 18 Updated Mar 6, 2023
  • LoopExtrusion Public

    A tool to simulate loop extrusion in chromatin

    imodpasteur/LoopExtrusion’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 11, 2023
  • smlm-file-format Public

    A portable and extendable file format for storing and sharing localization microscopy data.

    imodpasteur/smlm-file-format’s past year of commit activity
    Java 6 MIT 2 0 1 Updated Oct 6, 2022
  • ZOLA-3D Public

    Zernike Optimized Localization Algorithm for 3D single molecule localizations

    imodpasteur/ZOLA-3D’s past year of commit activity
    Java 17 GPL-3.0 3 4 0 Updated Sep 20, 2022
  • smlm-viewer Public
    imodpasteur/smlm-viewer’s past year of commit activity
    JavaScript 0 0 0 0 Updated Aug 4, 2021

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