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Merge pull request #26 from inbo/watervogel
Watervogel
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,18 +1,18 @@ | ||
| ^_pkgdown.yml$ | ||
| ^.*\.Rproj$ | ||
| ^CITATION\.cff$ | ||
| ^LICENSE.md$ | ||
| ^README\.Rmd$ | ||
| ^\.Rproj\.user$ | ||
| ^\.git$ | ||
| ^\.github$ | ||
| ^\.httr-oauth$ | ||
| ^\.lintr$ | ||
| ^\.Rproj\.user$ | ||
| ^\.zenodo\.json$ | ||
| ^_pkgdown.yml$ | ||
| ^checklist.yml$ | ||
| ^CITATION\.cff$ | ||
| ^codecov\.yml$ | ||
| ^data-raw$ | ||
| ^docs$ | ||
| ^LICENSE.md$ | ||
| ^man-roxygen$ | ||
| ^pkgdown$ | ||
| ^README\.Rmd$ | ||
| ^wercker\.yml$ |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -5,19 +5,20 @@ on: | |
| - master | ||
| - ghpages | ||
|
|
||
| name: "check package" | ||
| name: "check package with checklist" | ||
|
|
||
| jobs: | ||
| check-package: | ||
| runs-on: ubuntu-latest | ||
| name: "check package" | ||
| env: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
| ORCID_TOKEN: ${{ secrets.ORCID_TOKEN }} | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | ||
| AWS_DEFAULT_REGION: ${{ secrets.AWS_DEFAULT_REGION }} | ||
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | ||
| N2KBUCKET: ${{ secrets.N2KBUCKET }} | ||
| permissions: | ||
| contents: read | ||
| steps: | ||
| - uses: inbo/actions/check_pkg@master | ||
| with: | ||
| token: ${{ secrets.PAT }} | ||
| - uses: inbo/actions/[email protected] | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
|
|
@@ -3,22 +3,21 @@ on: | |
| branches: | ||
| - main | ||
| - master | ||
| schedule: | ||
| - cron: '6 0 15 * *' | ||
| permissions: | ||
| contents: write | ||
|
|
||
| name: "check package on main" | ||
| name: "check package on main with checklist" | ||
|
|
||
| jobs: | ||
| check-package: | ||
| runs-on: ubuntu-latest | ||
| name: "check package" | ||
| env: | ||
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | ||
| ORCID_TOKEN: ${{ secrets.ORCID_TOKEN }} | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | ||
| AWS_DEFAULT_REGION: ${{ secrets.AWS_DEFAULT_REGION }} | ||
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | ||
| N2KBUCKET: ${{ secrets.N2KBUCKET }} | ||
| steps: | ||
| - uses: inbo/actions/check_pkg@master | ||
| with: | ||
| token: ${{ secrets.PAT }} | ||
| - uses: inbo/actions/[email protected] | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,30 +1,41 @@ | ||
| name: Releases | ||
|
|
||
| on: | ||
| push: | ||
| tags: | ||
| - 'v*' | ||
|
|
||
| name: Create Release | ||
| - v* | ||
| workflow_run: | ||
| workflows: ["check package on main with checklist"] | ||
| types: | ||
| - completed | ||
|
|
||
| jobs: | ||
| build: | ||
| name: Create Release | ||
| prepare: | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| tag: ${{ steps.gettag.outputs.tag }} | ||
| body: ${{ steps.gettag.outputs.body }} | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v2 | ||
| - name: Get tag message | ||
| - uses: actions/checkout@v3 | ||
| - name: Get tag | ||
| run: | | ||
| TAG_BODY=$(git tag --contains ${{ github.sha }} -n100 | awk '(NR>1)') | ||
| echo "::set-output name=TAG_BODY::$TAG_BODY" | ||
| id: tag-body | ||
| - name: Create Release | ||
| id: create_release | ||
| uses: actions/create-release@v1 | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| git fetch --tags --force | ||
| TAG=$(git tag --contains $(git rev-parse HEAD)) | ||
| echo "tag=$TAG" >> "$GITHUB_OUTPUT" | ||
| TAG_BODY=$(git tag --contains $(git rev-parse HEAD) --format='%(contents)') | ||
| TAG_BODY="${TAG_BODY//'%'/'%25'}" | ||
| TAG_BODY="${TAG_BODY//$'\n'/'%0A'}" | ||
| TAG_BODY="${TAG_BODY//$'\r'/'%0D'}" | ||
| echo "body=$TAG_BODY" >> "$GITHUB_OUTPUT" | ||
| id: gettag | ||
| publish: | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| contents: write | ||
| needs: prepare | ||
| steps: | ||
| - uses: ncipollo/release-action@v1 | ||
| with: | ||
| tag_name: ${{ github.ref }} | ||
| release_name: Release ${{ github.ref }} | ||
| body: ${{ steps.tag-body.outputs.TAG_BODY }} | ||
| draft: false | ||
| prerelease: false | ||
| name: Release ${{needs.prepare.outputs.tag}} | ||
| tag: ${{needs.prepare.outputs.tag}} | ||
| body: ${{needs.prepare.outputs.body}} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,7 +1,22 @@ | ||
| .httr-oauth | ||
| *.dbf | ||
| *.doc* | ||
| *.gddoc | ||
| *.gdsheet | ||
| *.gpkg | ||
| *.html | ||
| *.mdb | ||
| *.shp* | ||
| *.shx | ||
| *.xls* | ||
| *_files | ||
| .DS_Store | ||
| .RData | ||
| .Renviron | ||
| .Rhistory | ||
| .Rproj.user | ||
| .Ruserdata | ||
| *.html | ||
| .httr-oauth | ||
| docs | ||
| libs | ||
| output | ||
| renv/library |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,32 +1,36 @@ | ||
| { | ||
| "title": "n2kanalysis: Generic Functions to Analyse Data from the Natura 2000 Monitoring", | ||
| "version": "0.3.0", | ||
| "description": "All generic functions for the analysis. The full analysis is defined in the analysis package of each monitoring scheme.", | ||
| "creators": [ | ||
| { | ||
| "name": "Onkelinx, Thierry", | ||
| "orcid": "https://orcid.org/0000-0001-8804-4216" | ||
| } | ||
| ], | ||
| "upload_type": "software", | ||
| "access_right": "open", | ||
| "title": "n2kanalysis: Generic Functions to Analyse Data from the 'Natura 2000' Monitoring", | ||
| "version": "0.3.1", | ||
| "license": "GPL-3.0", | ||
| "communities": [ | ||
| { | ||
| "identifier": "inbo" | ||
| } | ||
| "upload_type": "software", | ||
| "description": "<p>All generic functions and classes for the analysis for the ‘Natura\n2000’ monitoring. The classes contain all required data and definitions\nto fit the model without the need to access other sources. Potentially\nthey might need access to one or more parent objects. An aggregation\nobject might for example need the result of an imputation object. The\nactual definition of the analysis, using these generic function and\nclasses, is defined in dedictated analysis R packages for every\nmonitoring scheme. For example ‘abvanalysis’ and\n‘watervogelanalysis’.<\/p>", | ||
| "keywords": [ | ||
| "analysis, reproducible research, natura 2000, monitoring" | ||
| ], | ||
| "access_right": "open", | ||
| "language": "eng", | ||
| "contributors": [ | ||
| { | ||
| "name": "Research Institute for Nature and Forest", | ||
| "type": "RightsHolder" | ||
| "name": "Onkelinx, Thierry", | ||
| "affiliation": "Research Institute for Nature and Forest (INBO)", | ||
| "orcid": "0000-0001-8804-4216", | ||
| "type": "ContactPerson" | ||
| }, | ||
| { | ||
| "name": "Research Institute for Nature and Forest (INBO)", | ||
| "type": "RightsHolder" | ||
| } | ||
| ], | ||
| "creators": [ | ||
| { | ||
| "name": "Onkelinx, Thierry", | ||
| "type": "ContactPerson", | ||
| "orcid": "https://orcid.org/0000-0001-8804-4216" | ||
| "affiliation": "Research Institute for Nature and Forest (INBO)", | ||
| "orcid": "0000-0001-8804-4216" | ||
| } | ||
| ], | ||
| "language": "eng", | ||
| "keywords": "R package" | ||
| "communities": [ | ||
| { | ||
| "identifier": "inbo" | ||
| } | ||
| ] | ||
| } |
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