mpxv

General scripts used for the analysis of monkeypox virus infection transcriptome, full proteome and phosphoproteome in HFF cells, 0, 6, 12, 24 h.p.i.

Packages and dependencies to run these scripts:
msglm:
msimportr:
OptEnrichSetCover:
analysis_utils_jl:

Name		Name	Last commit message	Last commit date
Latest commit History 65 Commits
.gitignore		.gitignore
HFF_downstream_analysis.R		HFF_downstream_analysis.R
Manifest.toml		Manifest.toml
Project.toml		Project.toml
README.md		README.md
archpc.env		archpc.env
assemble_fits_fp.R		assemble_fits_fp.R
assemble_fits_phospho.R		assemble_fits_phospho.R
combined_enrichment_analysis.jl		combined_enrichment_analysis.jl
drug_target_enrichment_analysis.jl		drug_target_enrichment_analysis.jl
intersect_proteome_enrichment_analysis.jl		intersect_proteome_enrichment_analysis.jl
mpxv.Rproj		mpxv.Rproj
msglm_fit_all_chunks_fp.R		msglm_fit_all_chunks_fp.R
msglm_fit_all_chunks_phospho.R		msglm_fit_all_chunks_phospho.R
msglm_fit_all_meanfield_fp.R		msglm_fit_all_meanfield_fp.R
msglm_fit_all_meanfield_phospho.R		msglm_fit_all_meanfield_phospho.R
msglm_fit_chunk_fp.R		msglm_fit_chunk_fp.R
msglm_fit_chunk_fp.lrz.sh		msglm_fit_chunk_fp.lrz.sh
msglm_fit_chunk_phospho.R		msglm_fit_chunk_phospho.R
msglm_fit_chunk_phospho.lrz.sh		msglm_fit_chunk_phospho.lrz.sh
msglm_plots_fp.R		msglm_plots_fp.R
msglm_plots_phospho.R		msglm_plots_phospho.R
phospho_analysis.jl		phospho_analysis.jl
prepare_data_fp.R		prepare_data_fp.R
prepare_data_phospho.R		prepare_data_phospho.R
prepare_phospho.jl		prepare_phospho.jl
protregroup.jl		protregroup.jl
rnaseq_DESeq2.R		rnaseq_DESeq2.R

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