v0.1.0

New Features

• estimateParams estimates parameters of exponential and Weibull transition hazards using maximum likelihood for a given data set after using prepareData.
• corTrans calculates the correlation between PFS and OS for a given set of transition hazards, and corPFSOS estimates this correlation for a given data set, optionally with a bootstrap based confidence interval.

Bug Fixes

• ExpSurvOS now returns 0 instead of NaN for large values of t.
• WeibSurvOS now does not return an error for large values of t.
• PWCSurvOS now does not return an error for large values of t. It also no longer returns values larger than 1. It is significantly faster, based on a closed form calculation instead of numerical integration.
• getSimulatedData now also works when there are no transitions from progression to death, similarly for getOneClinicalTrial (which now warns if there are no such transitions at all).

Miscellaneous

• PwcOSInt, integrateVector, WeibOSInteg are no longer exported, and only used internally.
• Renamed piecewise constant hazards function to getPWCHazard (previously getPCWHazard).

What's Changed

• add CRAN badges to start page by @danielinteractive in #54
• Update pkgdown configuration by @walkowif in #55
• Update assertions survival functions by @numbersman77 in #56
• Update token name by @walkowif in #58
• Update workflows by @walkowif in #59
• Workflow propagations by @walkowif in #61
• Workflow propagation by @walkowif in #62
• Use token in spelling workflow by @walkowif in #63
• adds ExpHazOS function by @holgstr in #65
• 66: Add Function to compute average Hazard Ratio OS by @holgstr in #67
• 69: Function to compute empirical power for a list of simulated trials by @holgstr in #70
• Update Trial Planning Vignette by @holgstr in #71
• Rewrite ExpSurvOS to prevent NaNs by @holgstr in #73
• Fix data generating mechanism for exp+Weibull by @holgstr in #76
• 77: fix problem for missing progression to death transitions by @danielinteractive in #79
• Fix WeibSurvOS by @holgstr in #80
• Adds prepareData by @holgstr in #82
• Add progress bar to getClinicalTrials by @holgstr in #85
• estimateParams() by @holgstr in #84
• Fix overflow error by @holgstr in #86
• Update Vignette by @holgstr in #81
• add rpact to suggests by @holgstr in #88
• Add unit test and coverage reports to pkgdown documentation by @walkowif in #89
• corPFSOS by @holgstr in #91
• Add bootstrap by @holgstr in #94
• Fix mistake in corPFSOS bootstrap by @holgstr in #95
• Vignette for correlation(PFS, OS) by @holgstr in #96
• 92: Add unit tests for correlation functions by @danielinteractive in #98
• 74: closed form calculations for PWCsurvOS by @danielinteractive in #97
• 64: cleaning up trialplanning.Rmd by @danielinteractive in #100
• 87: Add additional unit tests for survival helper functions by @danielinteractive in #99
• 101: Create hex logo for simIDM and prepare for CRAN release [skip vbump] by @danielinteractive in #102

New Contributors

• @numbersman77 made their first contribution in #56
• @holgstr made their first contribution in #65

Full Changelog: v0.0.5...v0.1.0