[skip vbump] upversion to 0.15.0 (#1096)

Related to #1013

DESCRIPTION

@@ -1,13 +1,15 @@
 Type: Package
 Package: teal
 Title: Exploratory Web Apps for Analyzing Clinical Trials Data
-Version: 0.14.0.9046
-Date: 2024-02-09
+Version: 0.15.0
+Date: 2024-02-07
 Authors@R: c(
-    person("Dawid", "Kaledkowski", , "[email protected]", role = c("aut", "cre")),
+    person("Dawid", "Kaledkowski", , "[email protected]", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9533-457X")),
     person("Pawel", "Rucki", , "[email protected]", role = "aut"),
-    person("Aleksander", "Chlebowski", , "[email protected]", role = "aut"),
+    person("Aleksander", "Chlebowski", , "[email protected]", role = "aut", comment = c(ORCID = "0000-0001-5018-6294")),
+    person("Andre", "Verissimo", , "[email protected]", role = "aut", comment = c(ORCID = "0000-0002-2212-339X")),
     person("Kartikeya", "Kirar", , "[email protected]", role = "aut"),
+    person("Vedha", "Viyash", , "[email protected]", role = "aut"),
     person("Marcin", "Kosinski", , "[email protected]", role = "aut"),
     person("Adrian", "Waddell", , "[email protected]", role = "aut"),
     person("Chendi", "Liao", , "[email protected]", role = "rev"),
@@ -31,8 +33,8 @@ BugReports: https://github.com/insightsengineering/teal/issues
 Depends:
     R (>= 4.0),
     shiny (>= 1.7.0),
-    teal.data (>= 0.3.0.9017),
-    teal.slice (>= 0.4.0.9027)
+    teal.data (>= 0.4.0),
+    teal.slice (>= 0.5.0)
 Imports:
     checkmate (>= 2.1.0),
     jsonlite,
@@ -43,7 +45,7 @@ Imports:
     rlang (>= 1.0.0),
     shinyjs,
     stats,
-    teal.code (>= 0.3.0.9009),
+    teal.code (>= 0.5.0),
     teal.logger (>= 0.1.1),
     teal.reporter (>= 0.2.0),
     teal.widgets (>= 0.4.0),

NEWS.md

@@ -1,4 +1,4 @@
-# teal 0.14.0.9046
+# teal 0.15.0
 
 ### New features
 

R/init.R

@@ -105,7 +105,7 @@ init <- function(data,
   ## `data`
   if (inherits(data, "TealData")) {
     lifecycle::deprecate_stop(
-      when = "0.99.0",
+      when = "0.15.0",
       what = "init(data)",
       paste(
         "TealData is no longer supported. Use teal_data() instead.",

R/tdata.R

@@ -46,7 +46,7 @@
 #' @export
 new_tdata <- function(data, code = "", join_keys = NULL, metadata = NULL) {
   lifecycle::deprecate_soft(
-    when = "0.99.0",
+    when = "0.15.0",
     what = "tdata()",
     details = paste(
       "tdata is deprecated and will be removed in the next release. Use `teal_data` instead.\n",

README.md

@@ -78,13 +78,13 @@ library(teal)
 app <- init(
   data = teal_data(iris = iris),
   modules = list(
-    module( 
+    module(
       label = "iris histogram",
       server = function(input, output, session, data) {
         updateSelectInput(session = session,
                           inputId =  "var",
                           choices = names(data()[["iris"]])[1:4])
-        
+
         output$hist <- renderPlot({
           req(input$var)
           hist(x = data()[["iris"]][[input$var]])
@@ -108,7 +108,7 @@ shinyApp(app$ui, app$server)
 
 ![App recording](man/figures/readme_app.webp)
 
-Please see [`teal.gallery`](https://insightsengineering.github.io/teal.gallery) and [TLG Catalog](https://insightsengineering.github.io/tlg-catalog) to see examples of `teal` apps.
+Please see [`teal.gallery`](https://insightsengineering.github.io/teal.gallery/) and [TLG Catalog](https://insightsengineering.github.io/tlg-catalog/) to see examples of `teal` apps.
 
 Please start with the ["Technical Blueprint" article](https://insightsengineering.github.io/teal/latest-tag/articles/blueprint/index.html), ["Getting Started" article](https://insightsengineering.github.io/teal/latest-tag/articles/teal.html), and then other [package vignettes](https://insightsengineering.github.io/teal/latest-tag/articles/index.html) for more detailed guide.
 

inst/WORDLIST

@@ -23,3 +23,4 @@ tabsetted
 themer
 theming
 uncheck
+ORCID

tests/testthat/test-tdata.R

@@ -2,6 +2,7 @@ withr::local_options(lifecycle_verbosity = "quiet")
 
 # ---- constructor ----
 testthat::test_that("new_tdata accepts reactive and not reactive MAE and data.frames", {
+  testthat::skip_if_not_installed("MultiAssayExperiment")
   utils::data(miniACC, package = "MultiAssayExperiment")
 
   testthat::expect_no_error(
@@ -179,6 +180,7 @@ testthat::test_that("get_code_tdata returns character code", {
 
 # ---- tdata2env ----
 testthat::test_that("tdata2env returns environment containing tdata contents ", {
+  testthat::skip_if_not_installed("MultiAssayExperiment")
   utils::data(miniACC, package = "MultiAssayExperiment")
   my_tdata <- new_tdata(data = list(iris = iris, mae = reactive(miniACC)))
 

vignettes/getting-started-with-teal.Rmd

@@ -10,7 +10,7 @@ vignette: >
 
 ## Introduction
 
-`teal` is a shiny-based interactive exploration framework for analyzing data, with particular emphasis on CDISC clinical trial data. 
+`teal` is a shiny-based interactive exploration framework for analyzing data, with particular emphasis on CDISC clinical trial data.
 `teal` applications allow their users to:
 
 * "Pull" in data from external data sources
@@ -92,7 +92,7 @@ It is also possible to specify relationships between the datasets using the `joi
 If data is not available and has to be pulled from a remote source, `init` must receive a `teal_data_module` that specifies how to obtain the desired datasets and put them into a `teal_data` object.
 See [this vignette](data-as-shiny-module.html) for details.
 
-In order to use CDISC clinical trial data in a `teal` application the `cdisc_data` function is used instead. 
+In order to use CDISC clinical trial data in a `teal` application the `cdisc_data` function is used instead.
 Custom `SDTM` standards can be handled with `teal_data` and `join_keys`.
 
 For further details, we recommend exploring the [`teal.data`](https://insightsengineering.github.io/teal.data/) package documentation.
@@ -120,7 +120,7 @@ This report can then be downloaded and a special _Report Previewer_ module will
 `teal` hands over data with reproducible code to every module included in the application.
 Note that `teal` does not display the code, that is the modules' responsibility.
 For example, the `example_module` function used above shows the code in the main panel together with other outputs.
-For more details see [this vignette](reproducible-code.html).
+For more details see [this vignette](including-data-in-teal-applications.html).
 
 ## Where to go next