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@insights-engineering-bot insights-engineering-bot released this 13 Oct 00:01
· 775 commits to main since this release
v0.10.0
0b4de1f
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Learn about vigilant mode.

New features

  • Allow passing MultiAssayExperiment to the teal::init using mae_dataset function or through
    the connectors.
  • Refactored filter panel to use MultiAssayExperiment objects. Filters can be set on a subject level
    (colData of MAE object) and on a experiment level (colData and rowData of an assay).
  • Added cdse_dataset_connector to create delayed data objects from CDSE.
  • Added datasetdb_dataset_connector to create delayed data objects from DataSetDB.
  • Added ricepass_connection to create delayed data objects from entimICE via ricepass.
  • Refactor of the filter panel:
    • Simplified setting of initial filter state without need to specify "choices" or "range" named list element depending on the variable class.
    • Dataset type determines an appearance and a functionality of related filters and filters summary.
    • Datasets are passed (by reference) from DDL to FilteredData skipping extracting data and
      their attributes.
    • Redesigned variable filter labels in "Active Filter Variables" panel.
    • Fully testable server functions.

Bug fixes

  • Fixed the bug caused by calling mutate_dataset multiple times on the same DatasetConnector or Dataset object.
  • Fixed a bug that caused the output of get_code function to not reproduce its raw data set.
  • Changed filter_spec to allow no variable selection upon app initialization, where the first possible value was previously selected.

Enhancements

  • modules parameter of teal::init function can also receive a list except root_modules
    function call.
  • Added split and merge methods to the JoinKeys object.
  • Added all_choices() as a possible argument to the selected parameter of filter_spec, select_spec and choices_selected indicating that all choices are selected.
  • The append method of a CodeClass object has been modified to print a warning message when the argument does not result in any code being added because it is duplicated.
  • Implemented delayed functionality to the mutate method of the Dataset and DatasetConnector objects.
  • Modified teal_data to return a CDISCData object whenever any of its arguments is a type of CDISCData object.
  • Updated filters to show both levels of a logical variable TRUE/FALSE even if one is missing from the original array.

Miscellaneous

  • Updated LICENCE and README with new package references.
  • Added a method get_hash to the Dataset class returning the MD5 hash of the object stored inside the Dataset object.
  • Replaced random.cdisc.data with scda in examples and tests.
  • Implemented functionality to store JoinKeys in Dataset and DatasetConnector classes.
  • Added error_on_lintr: TRUE to .lintr
  • The pipe operator %>% is now exported such that downstream code and packages can use it.
  • Removed hyperlinks to the rice package from the documentation.
Assets 4
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