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@cicdguy cicdguy released this 29 Jan 18:14
· 609 commits to main since this release
v0.10.1
f3bed22

Breaking changes

  • Changed the HTML identifiers of teal modules - now each nested module receives its own shiny namespace.
  • Deprecated all functions related to connectors that have been moved to their own separate packages.
  • Removed raw_dataset, raw_dataset_connector, named_dataset, named_dataset_file, named_dataset_connector, relational_dataset, relational_dataset_file, relational_dataset_connector, key, as_cdisc, as_cdisc_relational.
  • Removed rcd_connection and rcd_data; scda_dataset_connectors can be passed into cdisc_data and teal_data directly.
  • Replaced rcd_dataset_connector and rcd_cdisc_dataset_connector with scda_dataset_connector and scda_cdisc_dataset_connector respectively.
  • Renamed teal_show_js_log option into teal.show_js_log to match options naming convention.
  • Removed %is_in% and stop_shiny internal utility functions.

New features

Logging

  • Added support for logging using the logger package.
  • Added a new function register_logger, which registers a logger in a given namespace.
  • Added trace and info levels log messages to the teal framework.
  • Added pid and shiny session token into footnote so app developers can identify logs for apps.

Other

  • Added print methods to the DatasetConnector, RelationalData, RelationalDataconnector and JoinKeys classes and added input validation to the implementation of the print method that was already in the Dataset object.

  • Added public facing constructor functions for CDISCDataConnector, RelationalDataConnector, and DataConnection classes.

  • Modified data_extract_spec to allow both the filter and select parameters to be NULL, which results in the data_extract_ui acting as if a filter_spec with all variables as possible choices had been supplied as the filter argument and a select_spec with the multiple parameter set to TRUE had been supplied as the select argument.

  • Added support of the full screen for a module when the filters argument is equal NULL.

  • Added support for shiny::moduleServer passed to the server parameter of teal::module.

  • Added teal.threshold_slider_vs_checkboxgroup as an R option: if a categorical variable has more than this number of unique values, the filter panel uses a drop-down select input instead of a checkbox group.

  • Extended the FilteredData API to allow managing filter states programmatically and not only from the UI of a teal application.

  • Hid the buttons to remove filters from all datasets and each dataset when there are no active filters.

  • Updated init to accept RelationalData, data.frame, MultiAssayExperiment, Dataset, DatasetConnector, list or a function returning a named list as data input.

Bug fixes

  • choices_selected now correctly removes duplicates from the array passed to its choices parameter.
  • Fixed call returned by FilterState in case of using MultiAssayExperiment::subsetByColData. Now single condition for variable containing NA values is !is.na(var) & var == <condition>.
  • Fixed data loading of DatasetConnector being dependent on other Dataset or DatasetConnector objects.
  • Fixed restoring a bookmarked filter state of teal application.
  • Refactored module_nested_tabs to fix the issue with the filter panel not reacting to an input change in a nested module.
  • updateOptionalSelectInput no longer sets input to NULL when logical value is passed to selected.
  • Fixed setting JoinKeys when key name between two Dataset object differs.
  • Fixed printing of the JavaScript console logs to the R console when teal.show_js_log = TRUE.

Miscellaneous

  • Soft-deprecate mae_dataset() in favor of more general dataset() constructor.
  • Added a vignette describing the modifications to teal applications users can apply using R options.
  • Added default values to the label argument of select_spec and filter_spec.
  • Added validation to FilteredDataset::get_data to accept logical input only.
  • Changed references to outdated functions of teal.devel in the documentation.
  • Introduced a Teal prefix to all public R6 classes to avoid name collisions with other packages.
  • Removed dependency on utils.nest and replaced its functionality in teal with equivalents from the checkmate package and base R.
  • Replaced the old shiny server functions of DataConnection, RelationalDataConnector, DatasetConnector, and RelationalData with the shiny::moduleServer equivalents.
  • Running a teal application via ui_teal_with_splash and srv_teal_with_splash is now no longer recommended because it doesn't support new features (e.g. logging, bookmarking). Use init instead.
  • Updated the R version requirement to >= 4.0.
  • Updated the "filter panel collapse" icon to remove warnings when using shiny version >= 1.7.
  • Removed some of the non-exported, debugging modules.
  • Updated the footer tag style to be less visible.
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