This R package creates a Cytoscape GENSOR network from transcription factor files of RegulonDB.
Each transcription factor folder needs to have 5 tab delimited files: complexes.txt, modification.txt, objects.txt, reactants_products.txt and reactions.txt.
Also, Cytoscape needs to be open at the same time as the package is running.
-----INSTALLATION
A) Directly from github
library(devtools)
install_github("insomnium098/RegulonDBCytoscape/RegulonDBCytoscape")
OR
B) Using binary package (only for mac OS)
Download the binary file from https://github.com/insomnium098/RegulonDBCytoscape/releases
In RStudio select Tools > Install packages > And in package archive select the downloaded package
----- EXAMPLE USAGE:
x <- c("/Users/daniel/Proyecto-Cytoscape/SRsGUs/LacI")
cytoscapeRegulon(x)