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SciML/Catalyst.jl
SciML/Catalyst.jl PublicChemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.
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SciML/JumpProcesses.jl
SciML/JumpProcesses.jl PublicBuild and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)
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SciML/ReactionNetworkImporters.jl
SciML/ReactionNetworkImporters.jl PublicJulia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices
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