Oxford Planarian Bioinformatics Community

Jakke Neiro¹ & Nathan Kenny²

1. Aboobaker lab, Department of Zoology, University of Oxford [email protected]
2. Solana lab, Oxford Brookes University

This repository includes code and files generated by the Oxford Planarian Bioinformatics Community.

Annotation of the Schmidtea mediterranea genome

This notebook describes the generation of new expression-driven annotation of the sexual planarian genome (S. mediterranea) based on total RNA-seq data from this species. The annotation is based on 183 planarian RNA-seq samples (see the sample list), the PlanMine sexual genome annotation (SMESG-high), and the PlanMine sexual genome ()

Annotation of the D. japonica genome