Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Support for reading ANCOM-BC results (#68) #69

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

SergioAlias
Copy link

Description:

This PR addresses the issue described in #68 where the current read_qza function does not support reading ANCOM-BC results (qiime composition ancombc). This update adds the necessary functionality to enable read_qza to correctly interpret and handle the multiple CSV files present in the QZA file.

Changes Made:

  • read_qza.R:
    • Included "DataLoafPackageDirFmt" as a valid format.
    • Parsed CSV files included in ANCOM-BC result QZA file, so artifact$data is a list of data.frame objects
    • Renamed Intercept column in resulting data.frame objects since original column name, "(Intercept)", was being read in R as "X.Intercept." Columns are now renamed as simply "Intercept".

Related Issue:

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant