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  1. InsightSoftwareConsortium/ITK InsightSoftwareConsortium/ITK Public

    Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dime…

    C++ 1.6k 715

  2. dipy/dipy dipy/dipy Public

    DIPY is the paragon 3D/4D+ medical imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medi…

    Python 793 448

  3. nipreps/mriqc nipreps/mriqc Public

    Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

    Python 342 134

  4. bids-standard/bids-specification bids-standard/bids-specification Public

    Brain Imaging Data Structure (BIDS) Specification

    Python 338 190

  5. nipreps/nifreeze nipreps/nifreeze Public

    A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

    Python 5 7

  6. nipreps/niquery nipreps/niquery Public

    A principled tool to query open neuroimaging datasets, extract relevant information and create new datasets for research

    Python 1