Name		Name	Last commit message	Last commit date
Latest commit History 64 Commits
ACAD_mergePair_map.sh		ACAD_mergePair_map.sh
ATACseq_bam_filter_sort.sh		ATACseq_bam_filter_sort.sh
ATACseq_call_ATAC_peaks.sh		ATACseq_call_ATAC_peaks.sh
ATACseq_peakDiff_rep3.sh		ATACseq_peakDiff_rep3.sh
README.md		README.md
VCF_multiCall_bcftools.sh		VCF_multiCall_bcftools.sh
VCF_multiCall_bcftools_bamList.sh		VCF_multiCall_bcftools_bamList.sh
VCF_plink_ibsMatrix.sh		VCF_plink_ibsMatrix.sh
WGBS_1kb_methylation.sh		WGBS_1kb_methylation.sh
WGBS_AverageMethWindow.sh		WGBS_AverageMethWindow.sh
WGBS_call_w_mbias_params.sh		WGBS_call_w_mbias_params.sh
WGBS_legacy_bismarkAlign.sh		WGBS_legacy_bismarkAlign.sh
WGBS_mergeReps.sh		WGBS_mergeReps.sh
WGBS_pileup_bam2MethylCall.sh		WGBS_pileup_bam2MethylCall.sh
WGBS_standalone_trimGalore.sh		WGBS_standalone_trimGalore.sh
WGBS_trim_map_pipe.sh		WGBS_trim_map_pipe.sh
averageCoverage_samtools_depth.sh		averageCoverage_samtools_depth.sh
bam_to_wiggle.py		bam_to_wiggle.py
cg.awk		cg.awk
check_gzip.sh		check_gzip.sh
chg.awk		chg.awk
chh.awk		chh.awk
gemMappability_to_bigWig.sh		gemMappability_to_bigWig.sh
jb_BLASTqcXML_all.sh		jb_BLASTqcXML_all.sh
jb_BSseq_mCall.sh		jb_BSseq_mCall.sh
jb_Illumina2Cassava_SampleSheet.sh		jb_Illumina2Cassava_SampleSheet.sh
jb_RNAseq_HTseqCountsFromGff3.sh		jb_RNAseq_HTseqCountsFromGff3.sh
jb_SRA2sortedBAM.sh		jb_SRA2sortedBAM.sh
jb_SSR_fq2SeqLengths.sh		jb_SSR_fq2SeqLengths.sh
jb_TSSplot_Vv.sh		jb_TSSplot_Vv.sh
jb_TSSplot_annotation_Vv.sh		jb_TSSplot_annotation_Vv.sh
jb_bam2bigWig.sh		jb_bam2bigWig.sh
jb_bam2cram.sh		jb_bam2cram.sh
jb_bcf_call.sh		jb_bcf_call.sh
jb_blast_std2gff.sh		jb_blast_std2gff.sh
jb_countP5Barcodes.sh		jb_countP5Barcodes.sh
jb_cpan_install.sh		jb_cpan_install.sh
jb_eigen_to_vcf		jb_eigen_to_vcf
jb_fasta2lengthList.py		jb_fasta2lengthList.py
jb_fastq2fasta.py		jb_fastq2fasta.py
jb_gtf_to_geneBED.sh		jb_gtf_to_geneBED.sh
jb_illSeqOut_to_ACADngs.sh		jb_illSeqOut_to_ACADngs.sh
jb_merge_reads.sh		jb_merge_reads.sh
jb_methylkit_to_swDMR.sh		jb_methylkit_to_swDMR.sh
jb_picSortRMDup.sh		jb_picSortRMDup.sh
jb_plot_histogram.py		jb_plot_histogram.py
jb_salmon_quant.sh		jb_salmon_quant.sh
jb_setMethylRef.sh		jb_setMethylRef.sh
jb_set_BS_ref.sh		jb_set_BS_ref.sh
jb_trackhub_db.sh		jb_trackhub_db.sh
jb_unifiedGT_ancients.sh		jb_unifiedGT_ancients.sh
jb_vcf2tabix.sh		jb_vcf2tabix.sh
mpileup2methylation.py		mpileup2methylation.py
splitBAM.sh		splitBAM.sh
star_gatk_rnaseq_variants.sh		star_gatk_rnaseq_variants.sh
tn5adjust.sh		tn5adjust.sh
vcf2genotypes.sh		vcf2genotypes.sh

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