qiime2 tiny did not work out, since their qz* are too new for other p… #26
Workflow file for this run
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name: docker | |
on: | |
push: | |
branches: | |
- 'smaller_deblur' | |
jobs: | |
docker: | |
strategy: | |
matrix: | |
plugin: ["qp-deblur", "qtp-biom", "qp-target-gene", "qtp-sequencing", "nginx"] | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v4 | |
- name: Login to DockerHub | |
uses: docker/login-action@v3 | |
with: | |
username: ${{ vars.DOCKERHUB_USERNAME }} | |
password: ${{ secrets.DOCKERHUB_TOKEN }} | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v3 | |
- name: Read version from file | |
id: vars | |
run: | | |
VERSION=$(head -n 1 Images/${{ matrix.plugin }}/${{ matrix.plugin }}.dockerfile | cut -d ":" -f 2- | tr -d " ") | |
echo "IMAGE_TAG=$VERSION" >> $GITHUB_ENV | |
cp Images/${{ matrix.plugin }}/start_${{ matrix.plugin }}.sh Images/qp-deblur/trigger_noconda.py Images/qtp-biom/trigger.py Images/nginx/nginx_qiita.conf Images/${{ matrix.plugin }}/requirements.txt . | |
mkdir -p qiita_server_certificates/ | |
echo "fake" > qiita_server_certificates/qiita_server_certificates.pem | |
echo "fake" > qiita_server_certificates/fake_server.crt | |
- name: Build and push Docker image | |
uses: docker/build-push-action@v6 | |
with: | |
context: . | |
push: true | |
file: Images/${{ matrix.plugin }}/${{ matrix.plugin }}.dockerfile | |
tags: ${{ vars.DOCKERHUB_USERNAME }}/${{ matrix.plugin }}:${{ env.IMAGE_TAG }} |