New point release.
What's new?
- Use PySCeS for parameter identifiability analysis of kinetic models using the
CVODE
solver. When performing identifiability analysis in parallel usingmultiprocessing
, additional dependencies are required; these can be installed withpip install "identifiability[pyscesmp]"
. - Make the degree of the spline used for the profile likelihood plot configurable (default is 2).
- The
params
dictionary is added to the trace dictionary for every step to track all parameters. - The complete optimization result object is now available from the trace dictionary - useful for troubleshooting individual parameter runs.
- Standard error estimates are no longer required in the input optimization result, as they are not needed for this method.
© Johann M. Rohwer, October 2023