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identifiability - release 0.4

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@jmrohwer jmrohwer released this 19 Oct 12:48

New point release.

What's new?

  • Use PySCeS for parameter identifiability analysis of kinetic models using the CVODE solver. When performing identifiability analysis in parallel using multiprocessing, additional dependencies are required; these can be installed with pip install "identifiability[pyscesmp]".
  • Make the degree of the spline used for the profile likelihood plot configurable (default is 2).
  • The params dictionary is added to the trace dictionary for every step to track all parameters.
  • The complete optimization result object is now available from the trace dictionary - useful for troubleshooting individual parameter runs.
  • Standard error estimates are no longer required in the input optimization result, as they are not needed for this method.

© Johann M. Rohwer, October 2023