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@jonas-fuchs jonas-fuchs released this 24 Oct 08:51
· 9 commits to master since this release
v.0.5.3
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Learn about vigilant mode.

NEW:

  • switched to store True for -a (now no comma sep is needed)
  • check if array is empty (nothing to plot)
  • changed the --delete rationale

Rationale: virheats --delete is primarily a tool to show how samples differ between each other while deleting mutations that are common to all samples. However, simply deleting the column of the array if all are greater than 0 might lead to misinterpretation. Now it only deletes if the frequencies do not differ more than 0.5. Thereby allowing to still visualize if a mutation is present e.g. an original sample in a low frequency which increases to a dominant mutation. Feedback is highly welcome here.

FIXES:

  • fixed a bug where it would crash if all mutations lie outside annotations
  • fixed a rare bug if INFO field contained "TYPE"
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