Install only release packages

jorainer · May 17, 2024 · 9f351ad · 9f351ad
1 parent 633d1de
commit 9f351ad
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -43,9 +43,9 @@ Suggests:
     RMariaDB,
     pheatmap,
     MsBackendMgf (>= 1.12.0),
-    MsBackendMassbank (>= 0.3.3),
+    MsBackendMassbank (>= 1.10.0),
     pander,
-    CompoundDb (>= 0.99.6),
+    CompoundDb (>= 1.7.0),
     xcms,
     msdata,
     MetaboAnnotation (>= 1.8.1),

diff --git a/Dockerfile b/Dockerfile
@@ -30,7 +30,7 @@ RUN scripts/install-massbank.sh
 RUN scripts/mysql-init.sh
 
 ## Install the SpectraTutorials package and additional required packages
-RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask = FALSE); BiocManager::install('RforMassSpectrometry/MsBackendMassbank'); BiocManager::install('RforMassSpectrometry/MsBackendSql')"
+RUN Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); BiocManager::install(ask = FALSE); BiocManager::install('MsBackendMassbank'); BiocManager::install('MsBackendSql')"
 
 RUN service mariadb start && \
     Rscript -e "options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies = TRUE, build_vignettes = TRUE, repos = BiocManager::repositories())"