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Merge pull request #19 from jorainer/jomain
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Update readme
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jorainer committed Feb 19, 2024
2 parents 3f47765 + 38c04b6 commit f3e0d77
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Expand Up @@ -22,7 +22,7 @@ LazyData: false
Roxygen: list(markdown = TRUE)
Depends:
R (>= 4.3),
xcms (>= 3.99.4),
xcms (>= 4.1.5),
Spectra (>= 1.11.10),
MsExperiment,
msdata
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8 changes: 5 additions & 3 deletions README.md
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Expand Up @@ -55,8 +55,10 @@ required steps for installation are:
- If you don't already have, install [docker](https://www.docker.com/). Find
installation information [here](https://docs.docker.com/desktop/).
- Get the [docker image](https://hub.docker.com/r/jorainer/xcms_tutorials) of
this tutorial with `docker pull jorainer/xcms_tutorials:latest`.
- Start docker using
this tutorial e.g. from the command line with `docker pull
jorainer/xcms_tutorials:latest`.
- Start the docker container, either through the Docker Desktop, or on the
command line with
```
docker run \
-e PASSWORD=bioc \
Expand All @@ -72,7 +74,7 @@ required steps for installation are:

For manual installation, an R version >= 4.3.0 is required as well as recent
versions of the packages `MsExperiment`, `Spectra` and in particular the `xcms`
(version >= 3.99.0 is needed). These can be installed using the code below:
(version >= 4.1.0 is needed). These can be installed using the code below:

```r
install.packages("BiocManager")
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