ci: force installation of faahKO

jorainer · May 30, 2023 · f9bac37 · f9bac37
1 parent 4e02933
commit f9bac37
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml
@@ -182,6 +182,8 @@ jobs:
           ## Ideally, all dependencies should get installed in the first pass.
           BiocManager::install("rmarkdown", dependencies = TRUE, ask = FALSE, update = FALSE)
           BiocManager::install("BiocStyle", dependencies = TRUE, ask = FALSE, update = FALSE)
+          BiocManager::install("faahKO", dependencies = TRUE, ask = FALSE)
+          BiocManager::install("pander", dependencies = TRUE, ask = FALSE)
           BiocManager::install("sneumann/mzR", dependencies = TRUE, ask = FALSE, update=FALSE)
           BiocManager::install("RforMassSpectrometry/ProtGenerics", dependencies = TRUE, ask = FALSE, update=FALSE)
           BiocManager::install("lgatto/MSnbase", dependencies = TRUE, ask = FALSE, update=FALSE)
@@ -197,7 +199,7 @@ jobs:
           ## Manually install required packages
           BiocManager::install('rhdf5', dependencies = TRUE, ask = FALSE, update = FALSE, INSTALL_opts = '--force-biarch')
           BiocManager::install("RforMassSpectrometry/Spectra")
-          BiocManager::install("sneumann/xcms", ask = FALSE, update = FALSE)
+          BiocManager::install("sneumann/xcms", ask = FALSE, update = FALSE, build_vignettes = FALSE)
           BiocManager::install("SummarizedExperiment", ask = FALSE, update = FALSE)
           remotes::install_github("jorainer/xcmsTutorials")
           # BiocManager::install(c("devtools", "usethis", "vdiffr"), dependencies = TRUE, ask = FALSE, update = FALSE)