Almond breeding simulations with AlphaSimR

Introduction

This repository contains R scripts that demonstrate simulations of plant breeding programs and techniques using AlphaSimR https://cran.r-project.org/package=AlphaSimR. These scripts and the process of simulating plant breeding programs are described in:

Bancic et al. (2023) bioRxiv https://www.biorxiv.org/content/10.1101/2023.12.30.573724v1

@article{BancicEtAl2023,
  title = {Plant breeding simulations with AlphaSimR},
  author = {Bančič, Jon and Greenspoon, Philip and Gaynor, R Chris and Gorjanc, Gregor},
  journal = {bioRxiv},
  year = {2023},
  doi = {10.1101/2023.12.30.573724}
}

If you use this material, please cite the above publication and the original AlphaSimR publication:

@article{Gaynor2021AlphaSimR,
  author = {Gaynor, R. Chris and Gorjanc, Gregor and Hickey, John M.},
  title = {{AlphaSimR}: An {R}-package for Breeding Program Simulations},
  volume = {11},
  year = {2021},
  doi = {10.1093/g3journal/jkaa017},
  journal = {G3: Genes|Genomes|Genetics}
}