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  1. fast-oopsi fast-oopsi Public

    a repository containing everything relevant to our fast non-negative deconvolution work

    TeX 35 6

  2. oopsi oopsi Public

    up-to-date code for model-based inference of spike trains from calcium imaging

    MATLAB 24 9

  3. smc-oopsi smc-oopsi Public

    code to implement our sequential monte carlo (smc) algorithm to perform optimal optical spike inference (oopsi) for individual neurons

    MATLAB 17 5

  4. FastApproximateQAP FastApproximateQAP Public

    Fast Approximate Quadratic Assignment for (Brain) Graph Matching

    TeX 16 9

  5. pop-oopsi pop-oopsi Public

    this repository stores code, text, simulations, and figs (and maybe more) for our population oopsi filter

    MATLAB 13 2

  6. PyGraphStat PyGraphStat Public

    python code for statistical analysis of graph-valued data

    Python 7 2