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1. SeqPrep SeqPrep Public

   Tool for stripping adaptors and/or merging paired reads with overlap into single reads.

   C 141 51

2. IntroToStatisticalLearningR- IntroToStatisticalLearningR- Public

   Work on Introduction to Statistical Learning

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3. SimSeq SimSeq Public

   An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina data as possible. Some of these quirks include the potential f…

   C 66 12

4. KentLib KentLib Public

   Subset of the kent source libraries (perhaps out of date) that are easily built and installed on OSX and Linux. These libraries provide usefull utilities for bioinformatics programming in C. This m…

   C 13 3

5. Jellyfish Jellyfish Public

   Fork of the jellyfish kmer counter. Here is the description copied from their site: JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and…

   C++ 5 3

6. re-pair re-pair Public

   Program to re-do the pairing of fastq reads. This program is modified from http://code.google.com/p/ngopt/source/browse/trunk/tools/pair_reads/repair.cpp?r=85

   C++ 5 1