Fix html build errors and warnings

user_guide/doc/source/namelists/jules_vegetation.nml.rst

@@ -650,23 +650,6 @@ This file sets the vegetation options. It contains one namelist called :nml:lst:
    FALSE
        Do not use vegetative drag scheme.
 
-.. nml:member:: l_red
-
-   :type: logical
-   :default: F
-
-   Switch to use the Robust Ecosystem Demography (RED).
-   This is based on :ref:`Argles, Arthur PK, et al.
-   (2020)`.
-
-   Only use if any :nml:mem:`l_triffid` = TRUE.
-
-   TRUE
-       Use the Robust Ecosystem Demography.
-
-   FALSE
-       Do not use the Robust Ecosystem Demography.
-
 .. nml:member:: l_rsl_scalar
 
    :type: logical

user_guide/doc/source/namelists/red_params.nml.rst

@@ -0,0 +1,121 @@
+``red_params.nml``
+==================
+
+This file contains a single namelist called :nml:lst:`JULES_RED` that sets parameters relevant to the `Robust Ecosystem Demography submodel (RED version 1.0) <https://gmd.copernicus.org/articles/13/4067/2020/>`_.
+Activate RED using the :nml:mem:`JULES_VEGETATION::l_red` switch in :nml:lst:`JULES_VEGETATION`.
+
+``JULES_RED`` namelist members
+----------------------------------
+
+.. nml:namelist:: JULES_RED
+
+This namelist is used to read PFT parameters that are only needed by the Robust Ecosystem Demography (RED). Values are not used if RED is not selected.
+
+.. note:: Where a quantity is said to have units of "/360days", this means that it is an amount per 360 days.
+
+.. nml:group:: Only used when :nml:mem:`JULES_VEGETATION::l_red` = TRUE.
+
+   .. nml:member:: alpha_recrt
+
+      :type: real(npft)
+      :default: None
+
+      The fraction of PFT carbon assimilate devoted to reproduction.
+
+
+   .. nml:member:: crwn_area0
+
+      :type: real(npft)
+      :default: None
+
+      The lowest PFT crown area, value corresponds to the mass0 class (m\ :sup:`2`).
+
+
+   .. nml:member:: dom_order
+
+      :type: integer(npft)
+      :default: None
+
+      The value that describes the competitive hierarchy of PFTs competition in
+      JULES-RED, the higher the value the more dominant: 3 (trees), 2 (shrubs), 1 (grass).
+
+
+   .. nml:member:: height0
+
+      :type: real(npft)
+      :default: None
+
+      The lowest PFT height, value corresponds to the mass0 class (m).
+
+
+   .. nml:member:: lai_bal0
+
+      :type: real(npft)
+      :default: None
+
+      The lowest PFT balanced LAI, which corresponds to the mass0 class (m\ :sup:`2`/m\ :sup:`2`).
+
+
+   .. nml:member:: mass0
+
+      :type: real(npft)
+      :default: None
+
+      The lowest PFT mass class (kg C).
+
+
+   .. nml:member:: massi
+
+      :type: real(npft)
+      :default: None
+
+      The highest PFT mass class (kg C).
+
+
+   .. nml:member:: mclass
+
+      :type: integer(npft)
+      :default: None
+
+      Number of mass classes for each PFT.
+
+
+   .. nml:member:: mort_base
+
+      :type: real(npft)
+      :default: None
+
+      The baseline PFT mortality rate (/360 days).
+
+
+   .. nml:member:: phi_a
+
+      :type: real(npft)
+      :default: 0.50
+
+      The allometric/power scaling of PFT mass to PFT crown area (`West, G. B., et al 2009 <https://doi.org/10.1073/pnas.0812294106>`_).
+
+
+   .. nml:member:: phi_g
+
+      :type: real(npft)
+      :default: 0.75
+
+      The allometric/power scaling of PFT mass to PFT mass growth rate (`West, G. B., et al., 1997 <https://www.science.org/doi/10.1126/science.276.5309.122>`_).
+
+
+   .. nml:member:: phi_h
+
+      :type: real(npft)
+      :default: 0.25
+
+      The allometric/power scaling of PFT mass to PFT height (`Niklas, K. J., et al., 2001 <https://doi.org/10.1073/pnas.041590298>`_).
+
+
+   .. nml:member:: phi_l
+
+      :type: real(npft)
+      :default: 0.25
+
+      The allometric/power scaling of PFT mass to PFT leaf area index.
+

user_guide/doc/source/release_notes/JULES7-1.rst

@@ -18,7 +18,7 @@ General/Technical changes
 -------------------------
 
  *  Added a switch to allow interpretation of times in the model and the driving data as local solar time - see :nml:mem:`JULES_TIME::l_local_solar_time`. (#1327)
- *  Added a switch :nml:mem:`IMOGEN_RUN_LIST::l_drive_with_global_temps` so that JULES can be driven with global temperatures and climate patterns. (#1322)
+ *  Added a switch ``l_drive_with_global_temps`` so that JULES can be driven with global temperatures and climate patterns. (#1322)
  *  Made Medlyn stomatal conductance, Farquhar C\ :sub:`3` photosynthesis, and thermal acclimation available in the UM. (#1246)
  *  Further work towards allowing layered soil carbon (:nml:mem:`JULES_SOIL_BIOGEOCHEM::l_layeredc` = TRUE ) in the UM. (#1237)
  *  A varying grey tile emissivity has been passed in to JULES - currently only available if selected in LFRic. (#1247)