change tags for the update 1.0.9

junioreif · Aug 6, 2024 · cb6c7ce · cb6c7ce
1 parent 9a423e4
commit cb6c7ce
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Showing 6 changed files with 9 additions and 6 deletions.
diff --git a/OpenMiChroM/ChromDynamics.py b/OpenMiChroM/ChromDynamics.py
@@ -2276,7 +2276,7 @@ def printForces(self):
 
     def printHeader(self):
         print('{:^96s}'.format("***************************************************************************************"))
-        print('{:^96s}'.format("**** **** *** *** *** *** *** *** OpenMiChroM-1.0.8 *** *** *** *** *** *** **** ****"))
+        print('{:^96s}'.format("**** **** *** *** *** *** *** *** OpenMiChroM-1.0.9 *** *** *** *** *** *** **** ****"))
         print('')
         print('{:^96s}'.format("OpenMiChroM is a Python library for performing chromatin dynamics simulations."))
         print('{:^96s}'.format("OpenMiChroM uses the OpenMM Python API,"))
@@ -2294,6 +2294,9 @@ def printHeader(self):
         print('{:^96s}'.format("Oliveira Junior, A. B. et al."))
         print('{:^96s}'.format("Chromosome Modeling on Downsampled Hi-C Maps Enhances the Compartmentalization Signal."))
         print('{:^96s}'.format("J. Phys. Chem. B, doi:10.1021/acs.jpcb.1c04174."))
+        print('{:^96s}'.format("We also thank the polychrom <https://github.com/open2c/polychrom>"))
+        print('{:^96s}'.format("where part of this code was inspired."))
+        print('{:^96s}'.format("10.5281/zenodo.3579472."))
         print('')
         print('{:^96s}'.format("Copyright (c) 2024, The OpenMiChroM development team at"))
         print('{:^96s}'.format("Rice University"))

diff --git a/OpenMiChroM/CndbTools.py b/OpenMiChroM/CndbTools.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2020-2023 The Center for Theoretical Biological Physics (CTBP) - Rice University
+# Copyright (c) 2020-2024 The Center for Theoretical Biological Physics (CTBP) - Rice University
 # This file is from the Open-MiChroM project, released under the MIT License.
 
 R"""

diff --git a/OpenMiChroM/Integrators.py b/OpenMiChroM/Integrators.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2020-2023 The Center for Theoretical Biological Physics (CTBP) - Rice University
+# Copyright (c) 2020-2024 The Center for Theoretical Biological Physics (CTBP) - Rice University
 # This file is from the Open-MiChroM project, released under the MIT License. 
 
 R"""

diff --git a/OpenMiChroM/Optimization.py b/OpenMiChroM/Optimization.py
@@ -1,4 +1,4 @@
-# Copyright (c) 2020-2023 The Center for Theoretical Biological Physics (CTBP) - Rice University
+# Copyright (c) 2020-2024 The Center for Theoretical Biological Physics (CTBP) - Rice University
 # This file is from the Open-MiChroM project, released under the MIT License.
 
 R"""  

diff --git a/OpenMiChroM/__init__.py b/OpenMiChroM/__init__.py
@@ -1,4 +1,4 @@
-__version__ = '1.0.8'
+__version__ = '1.0.9'
 
 from .ChromDynamics import MiChroM
 from .Optimization import FullTraining, CustomMiChroMTraining

diff --git a/setup.py b/setup.py
@@ -5,7 +5,7 @@
 with open(path.join(this_dir, "README.rst")) as f:
     long_description = f.read()
 
-__version__ = "1.0.8"
+__version__ = "1.0.9"
 for line in open(path.join("OpenMiChroM", "__init__.py")):
     if line.startswith("__version__"):
         exec(line.strip())