Model Inputs

This package requires at least two input files, which will depend on the analysis you want to run. Links are provided here for the entire TCGA Tumor and Normal dataset as well as GTEx in HD5 format. These can be provided to either the --sample or --background option, depending on which one contains the N-of-1 sample of interest. These inputs require using the parameter --col-skip=5 due to additional metadata columns.

• TCGA Tumor (930M)
• TCGA Normal (76M)
• GTEx (796M)

There is one optional input, --gene-list, which points to a single-column file that contains genes to include in training. For testing purposes here is a link to that set:

• Druggable Genes List