Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ETL #2

Open
wants to merge 18 commits into
base: main
Choose a base branch
from
Open

ETL #2

wants to merge 18 commits into from

Conversation

Fxe
Copy link
Collaborator

@Fxe Fxe commented Jan 13, 2025

Description of PR purpose/changes

ETL Assembly/Genome (prodigal)

Testing Instructions

  • Details for how to test the PR:
 python -m pytest tests/src/parsers/test_etl_genome.py

Dev Checklist:

  • My code follows the guidelines at https://sites.google.com/lbl.gov/trussresources/home?authuser=0
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • I have made corresponding changes to the documentation
  • My changes generate no new warnings
  • I have added tests that prove my fix is effective or that my feature works
  • New and existing unit tests pass locally with my changes
  • I have run Ruff format to format my code
  • I have run Ruff check and fixed any errors that it uncovered
  • Any dependent changes have been merged and published in downstream modules

Updating Version and Release Notes (if applicable)

Copy link

codecov bot commented Feb 24, 2025

Welcome to Codecov 🎉

Once you merge this PR into your default branch, you're all set! Codecov will compare coverage reports and display results in all future pull requests.

Thanks for integrating Codecov - We've got you covered ☂️

@ialarmedalien
Copy link
Collaborator

Can you add in a very basic end-to-end test with sample input files and expected output?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants