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| Original file line number | Diff line number | Diff line change |
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| name: "Code scanning - action" | ||
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| on: | ||
| push: | ||
| pull_request: | ||
| schedule: | ||
| - cron: '0 19 * * 0' | ||
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| jobs: | ||
| CodeQL-Build: | ||
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| # CodeQL runs on ubuntu-latest and windows-latest | ||
| runs-on: ubuntu-latest | ||
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| steps: | ||
| - name: Checkout repository | ||
| uses: actions/checkout@v2 | ||
| with: | ||
| # We must fetch at least the immediate parents so that if this is | ||
| # a pull request then we can checkout the head. | ||
| fetch-depth: 2 | ||
|
|
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| # If this run was triggered by a pull request event, then checkout | ||
| # the head of the pull request instead of the merge commit. | ||
| - run: git checkout HEAD^2 | ||
| if: ${{ github.event_name == 'pull_request' }} | ||
|
|
||
| # Initializes the CodeQL tools for scanning. | ||
| - name: Initialize CodeQL | ||
| uses: github/codeql-action/init@v1 | ||
| # Override language selection by uncommenting this and choosing your languages | ||
| # with: | ||
| # languages: go, javascript, csharp, python, cpp, java | ||
|
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| # Autobuild attempts to build any compiled languages (C/C++, C#, or Java). | ||
| # If this step fails, then you should remove it and run the build manually (see below) | ||
| - name: Autobuild | ||
| uses: github/codeql-action/autobuild@v1 | ||
|
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| # ℹ️ Command-line programs to run using the OS shell. | ||
| # 📚 https://git.io/JvXDl | ||
|
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| # ✏️ If the Autobuild fails above, remove it and uncomment the following three lines | ||
| # and modify them (or add more) to build your code if your project | ||
| # uses a compiled language | ||
|
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| #- run: | | ||
| # make bootstrap | ||
| # make release | ||
|
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| - name: Perform CodeQL Analysis | ||
| uses: github/codeql-action/analyze@v1 |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,14 @@ | ||
| version: 2 | ||
| updates: | ||
| - package-ecosystem: docker | ||
| directory: "/" | ||
| schedule: | ||
| interval: weekly | ||
| time: '11:00' | ||
| open-pull-requests-limit: 10 | ||
| - package-ecosystem: pip | ||
| directory: "/" | ||
| schedule: | ||
| interval: daily | ||
| time: '11:00' | ||
| open-pull-requests-limit: 10 |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,11 @@ | ||
| --- | ||
| name: Manual Build & Push | ||
| on: | ||
| workflow_dispatch: | ||
| jobs: | ||
| build-push: | ||
| uses: kbase/.github/.github/workflows/reusable_build-push.yml@main | ||
| with: | ||
| name: '${{ github.event.repository.name }}-develop' | ||
| tags: br-${{ github.ref_name }} | ||
| secrets: inherit |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,43 @@ | ||
| --- | ||
| name: Pull Request Build, Tag, & Push | ||
| on: | ||
| pull_request: | ||
| branches: | ||
| - develop | ||
| - main | ||
| - master | ||
| types: | ||
| - opened | ||
| - reopened | ||
| - synchronize | ||
| - closed | ||
| jobs: | ||
| build-develop-open: | ||
| if: github.base_ref == 'develop' && github.event.pull_request.merged == false | ||
| uses: kbase/.github/.github/workflows/reusable_build.yml@main | ||
| secrets: inherit | ||
| build-develop-merge: | ||
| if: github.base_ref == 'develop' && github.event.pull_request.merged == true | ||
| uses: kbase/.github/.github/workflows/reusable_build-push.yml@main | ||
| with: | ||
| name: '${{ github.event.repository.name }}-develop' | ||
| tags: pr-${{ github.event.number }},latest | ||
| secrets: inherit | ||
| build-main-open: | ||
| if: (github.base_ref == 'main' || github.base_ref == 'master') && github.event.pull_request.merged == false | ||
| uses: kbase/.github/.github/workflows/reusable_build-push.yml@main | ||
| with: | ||
| name: '${{ github.event.repository.name }}' | ||
| tags: pr-${{ github.event.number }} | ||
| secrets: inherit | ||
| build-main-merge: | ||
| if: (github.base_ref == 'main' || github.base_ref == 'master') && github.event.pull_request.merged == true | ||
| uses: kbase/.github/.github/workflows/reusable_build-push.yml@main | ||
| with: | ||
| name: '${{ github.event.repository.name }}' | ||
| tags: pr-${{ github.event.number }},latest-rc | ||
| secrets: inherit | ||
| trivy-scans: | ||
| if: (github.base_ref == 'develop' || github.base_ref == 'main' || github.base_ref == 'master' ) && github.event.pull_request.merged == false | ||
| uses: kbase/.github/.github/workflows/reusable_trivy-scans.yml@main | ||
| secrets: inherit |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,25 @@ | ||
| --- | ||
| name: Release - Build & Push Image | ||
| on: | ||
| release: | ||
| branches: | ||
| - main | ||
| - master | ||
| types: [ published ] | ||
| jobs: | ||
| check-source-branch: | ||
| uses: kbase/.github/.github/workflows/reusable_validate-branch.yml@main | ||
| with: | ||
| build_branch: '${{ github.event.release.target_commitish }}' | ||
| validate-release-tag: | ||
| needs: check-source-branch | ||
| uses: kbase/.github/.github/workflows/reusable_validate-release-tag.yml@main | ||
| with: | ||
| release_tag: '${{ github.event.release.tag_name }}' | ||
| build-push: | ||
| needs: validate-release-tag | ||
| uses: kbase/.github/.github/workflows/reusable_build-push.yml@main | ||
| with: | ||
| name: '${{ github.event.repository.name }}' | ||
| tags: '${{ github.event.release.tag_name }},latest' | ||
| secrets: inherit |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,87 @@ | ||
| name: KBase Groups tests | ||
|
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||
| on: | ||
| pull_request: | ||
| types: | ||
| - opened | ||
| - reopened | ||
| - synchronize | ||
| - ready_for_review | ||
| push: | ||
| # run workflow when merging to main or develop | ||
| branches: | ||
| - main | ||
| - master | ||
| - develop | ||
|
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| jobs: | ||
|
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| groups_tests: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| include: | ||
| # the current production setup | ||
| - java: '8' | ||
| codecov: true | ||
| mongo: 'mongodb-linux-x86_64-3.6.13' | ||
| wired_tiger: 'false' | ||
| ant_test: 'test' | ||
| # test all code w/ java 11 | ||
| - java: '11' | ||
| codecov: true | ||
| mongo: 'mongodb-linux-x86_64-3.6.13' | ||
| wired_tiger: 'false' | ||
| ant_test: 'test' | ||
| # test the latest 3X version of mongo against just the mongo storage code | ||
| - java: '11' | ||
| mongo: 'mongodb-linux-x86_64-3.6.23' | ||
| wired_tiger: 'true' | ||
| ant_test: 'test_mongo_storage' | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
|
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| - name: Set up java | ||
| uses: actions/setup-java@v3 | ||
| with: | ||
| distribution: 'temurin' | ||
| java-version: ${{matrix.java}} | ||
|
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| - name: Install dependencies and set up test config | ||
| shell: bash | ||
| run: | | ||
| export HOMEDIR=`pwd` | ||
| # move to parent dir of homedir to install binaries etc | ||
| cd .. | ||
| # set up jars | ||
| git clone https://github.com/kbase/jars | ||
| export JARSDIR=$(pwd)/jars/lib/jars/ | ||
| # set up mongo | ||
| wget -q http://fastdl.mongodb.org/linux/${{matrix.mongo}}.tgz | ||
| tar xfz ${{matrix.mongo}}.tgz | ||
| export MONGOD=`pwd`/${{matrix.mongo}}/bin/mongod | ||
| # set up test config | ||
| cd $HOMEDIR | ||
| cp -n test.cfg.example test.cfg | ||
| sed -i "s#^test.jars.dir.*#test.jars.dir=$JARSDIR#" test.cfg | ||
| sed -i "s#^test.temp.dir =.*#test.temp.dir=temp_test_dir#" test.cfg | ||
| sed -i "s#^test.mongo.exe.*#test.mongo.exe=$MONGOD#" test.cfg | ||
| sed -i "s#^test.mongo.useWiredTiger.*#test.mongo.useWiredTiger=${{matrix.wired_tiger}}#" test.cfg | ||
| cat test.cfg | ||
| - name: Run tests | ||
| shell: bash | ||
| run: | | ||
| ant ${{matrix.ant_test}} | ||
| - name: Upload coverage to Codecov | ||
| if: matrix.include.codecov | ||
| uses: codecov/codecov-action@v3 | ||
| with: | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
| fail_ci_if_error: true |
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