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D->M #207

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D->M #207

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bio-boris
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@bio-boris bio-boris commented Nov 14, 2024 •
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Notable Changes from copilot

Version Bump
    Updated the version in app.py to align with the new release.

New Endpoints
    Added import_filetypes endpoint.
    Documented write_bulk_specification endpoint providing structure for bulk data insertion.

Bug Fixes and Improvements
    Addressed several markdown formatting issues across documentation.
    Enhanced error handling for file parsing and data type specifications.

These changes encompass significant updates and improvements aimed at enhancing functionality and documentation accuracy.

eapearson and others added 30 commits July 11, 2023 10:10
@eapearson
ignore vscode settings [PTV-1887]
b1a4513
@eapearson
format [PTV-1887]
9ff592d
@eapearson
sort dependencies [PTV-1887]
b19f845
@eapearson
actually vscode config was already checked in, so update [PTV-1887]
654512f
@eapearson
many formatting and linting fixes [PTV-1887]
a1e20ae 
still more to go, as there are some more serious issues like access to private members, and out of date dependencies, but this puts us on a good footing for any future change w/less format spam.
@eapearson
deprecated [PTV-1887]
4a89f79
@eapearson
fix tests [PTV-1887]
bfccfdd
@eapearson
add coverage reports, allow test path parameter [PTV-1887]
41e6958
@eapearson
update dependencies, fix skipped tests, fix broken tests and code, us…
52842e0 
…e Python 3.11.4 [PTV-1887]
@eapearson
disable some sonarlint warnings [PTV-1887]
f361874
@eapearson
remove unused import [PTV-1887]
0e74f2a
@eapearson
address couple more sonarcloud issues [PTV-1887]
4b7eba7
@eapearson
last sonarcloud changes? [PTV-1887]
b663f2d
@eapearson
add auto asyncio mode for tests, remove annotations [PTV-1887]
9b62aaf
@eapearson
replace references to Python 3.9.x w/ 3.11.4, repair README.md markdo…
2030893 
…wn a bit too [PTV-1887]
@eapearson
add release note [PTV-1887]
a01ae03
@eapearson
ignore PyCharm .idea directory [PTV-1887]
aa366b2
@eapearson
run black again [PTV-1887]
39ebf9a
@eapearson
some markdown fixing and reformatting [PTV-1887]
0633ddd 
 Not perfect. The readme has dozens of issues reported.
@eapearson
remove unused imports [PTV-1887]
524dbbd
@eapearson
add black and pymarkdownlint for development time [PTV-1887]
d901d84
@eapearson
more markdown fixes, yuck [PTV-1887]
9734932
@eapearson
remove unused variables [PTV-1887]
73e05d0
@eapearson
use lower_snake_case for function name [PTV-1887]
f28ad35
@eapearson
one more silly set of markdown formatting fixes [PTV-1887]
abedcb7 
just to satisfy remark-lint used by codacy, as it uses rules not supported by PyCharm. So annoying.
@eapearson
another silly set of markdown formatting fixes [PTV-1887]
60a31ab
@eapearson
import all Mappings symbols explicitly [PTV-1887]
f10b07d
@eapearson
remove pymarkdownlnt (not used), revert globus-sdk to 1.6.1 [PTV-1887]
478b1e8 
There are breaking changes; it should be updated, but probably not in this set of changes.
@eapearson
Merge pull request #190 from kbase/PTV-1887
2ff63c4 
PTV-1887 - linting, formatting, updating reps, fixing tests
@ialarmedalien
Adding dependabot and codeql workflows to the repo (#194)
6efbbc4 
* Adding dependabot and codeql workflows to the repo
briehl and others added 29 commits December 10, 2024 08:57
@briehl
update schema
748380c
@briehl
remove fancy error texts
528bb40
@briehl
move schema loading/validating to app config
86c77ad
@briehl
add empty tests for schema
5469ce7
@briehl
rename schema file
a10dc03
@briehl
ruff formatting
b010cde
@briehl
fix configs
af30bf2
@briehl
updates to config, validator, etc.
ebf25e7
@briehl
ruff formatting
cb4b95a
@briehl
Merge branch 'dts-manifest-schema' into dts-manifest-parse
c099ca5
@briehl
update parser, tests
1c8ef68
@briehl
simply and reformat
33ffb2c
@briehl
removing unused variable
cf6c9f3
@briehl
start fake files with uuid
711808b
@briehl
add TODO
05b619b
@briehl
Merge pull request #209 from kbase/dts-manifest-schema
5a7c064 
DTS manifest schema
@briehl
Merge branch 'dts-manifest-schema' into dts-manifest-parse
84e8b2f
@briehl
minor tweaks
6136140
@briehl
ruff formatting
499dfe4
@briehl
fix typo
224153a
@briehl
ruff formatting
d0e08b9
@briehl
Merge pull request #210 from kbase/dts-manifest-parse
b5f6790 
DTS Manifest parsing
@briehl
update config
73902c5
@briehl
Merge pull request #211 from kbase/dts-manifest-parse
7a60212 
Fix config
@briehl
Merge pull request #212 from kbase/dts-manifest-schema
aa24fff 
Merge dts-manifest-schema changes into develop
@briehl
fix dts manifest / other json mapping
d211696
@briehl
ruff formatting
5448d40
@briehl
ruff formatting
027e540
@briehl
Merge pull request #213 from kbase/dts-manifest-mapping
76d1f6c 
Adjust file mappings
@sonarqubecloud SonarQubeCloud
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Quality Gate Failed Quality Gate failed

Failed conditions
2 Security Hotspots

See analysis details on SonarQube Cloud

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4 participants
@bio-boris @eapearson @ialarmedalien @briehl