Dockerfile

FROM kbase/sdkbase2:python
MAINTAINER KBase Developer
# -----------------------------------------
# In this section, you can install any system dependencies required
# to run your App.  For instance, you could place an apt-get update or
# install line here, a git checkout to download code, or run any other
# installation scripts.

RUN echo "start building docker image"

WORKDIR /kb/module

# need to move from stretch to buster

RUN echo "deb http://deb.debian.org/debian buster main contrib" > /etc/apt/sources.list

RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 648ACFD622F3D138 0E98404D386FA1D9 DCC9EFBF77E11517

RUN apt-get update && apt-get install --yes g++ zlib1g-dev

WORKDIR /kb/module

RUN git clone https://github.com/rrwick/Filtlong.git \
    && cd Filtlong \
    && git reset --hard c56f02b980008d74a216108e54b1e592337c1b4b \
    && make -j \
    && cp bin/filtlong /usr/local/bin

# -----------------------------------------

COPY ./ /kb/module
RUN mkdir -p /kb/module/work
RUN chmod -R a+rw /kb/module

WORKDIR /kb/module

RUN make all

ENTRYPOINT [ "./scripts/entrypoint.sh" ]

CMD [ ]