Update README.md #34
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: build_and_publish | |
| on: | |
| push: | |
| branches: | |
| - stable | |
| - main | |
| jobs: | |
| get_version: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout code | |
| id: git_checkout | |
| uses: actions/checkout@v3 | |
| - name: Get version | |
| id: get_version | |
| run: | | |
| CURRENT_VERSION=$(sed -n '/^current_version/{ s/^.\+ = //; p; }' .bumpversion.cfg) | |
| if [[ "${GITHUB_REF}" == 'refs/heads/stable' ]]; then | |
| echo "::set-output name=version::${CURRENT_VERSION}" | |
| elif [[ "${GITHUB_REF}" == 'refs/heads/main' ]]; then | |
| DEV_VERSION="${CURRENT_VERSION}"+dev$(echo "${GITHUB_SHA}" | cut -c-7) | |
| echo "::set-output name=version::${DEV_VERSION}" | |
| echo "::set-output name=bump_version::yes" | |
| else | |
| echo "got bad gh ref: ${GITHUB_REF}" 1>&2 | |
| exit 1 | |
| fi | |
| outputs: | |
| bump_version: ${{ steps.get_version.outputs.bump_version }} | |
| version: ${{ steps.get_version.outputs.version }} | |
| build_and_publish_on_conda: | |
| runs-on: ubuntu-latest | |
| needs: get_version | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| VERSION: ${{ needs.get_version.outputs.version }} | |
| steps: | |
| - name: Checkout code | |
| id: git_checkout | |
| uses: actions/checkout@v3 | |
| - name: Setup conda | |
| id: setup_conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| python-version: 3.9 | |
| miniforge-variant: Mambaforge-pypy3 | |
| channels: umccr,bioconda,conda-forge,defaults | |
| channel-priority: true | |
| - name: Prepare env | |
| id: prepare_env | |
| run: | | |
| mamba install boa anaconda-client bump2version | |
| # When on development branch (inferred from bump_version value), append '-dev' to package name and set | |
| # commit-specific version | |
| - name: Set package name and version | |
| if: ${{ needs.get_version.outputs.bump_version == 'yes' }} | |
| run: | | |
| sed -i 's/name: bactabolize/name: bactabolize-dev/' conda/bactabolize/meta.yaml; | |
| bump2version patch \ | |
| --new-version "${VERSION}" \ | |
| --allow-dirty \ | |
| --no-commit | |
| - name: Build and upload conda package | |
| run: | | |
| conda mambabuild \ | |
| --token "${{ secrets.ANACONDA_TOKEN }}" \ | |
| conda/bactabolize/ | |
| build_and_publish_on_dockerhub: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - get_version | |
| - build_and_publish_on_conda | |
| # Only push on push to stable, which implicitly should be only version bumps | |
| if: github.ref == 'refs/heads/stable' | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| DOCKERHUB_REPO: "docker.io/scwatts/bactabolize" | |
| VERSION: ${{ needs.get_version.outputs.version }} | |
| steps: | |
| - name: Checkout code | |
| id: git_checkout | |
| uses: actions/checkout@v3 | |
| - name: Build Docker image | |
| run: | | |
| docker build \ | |
| --tag "${DOCKERHUB_REPO}:${VERSION}" \ | |
| --file docker/Dockerfile \ | |
| ./ | |
| - name: DockerHub auth | |
| run: | | |
| echo "${{ secrets.DOCKERHUB_TOKEN }}" | \ | |
| docker login \ | |
| --username "${{ secrets.DOCKERHUB_USERNAME }}" \ | |
| --password-stdin | |
| - name: DockerHub push | |
| run: | | |
| docker push "${DOCKERHUB_REPO}:${VERSION}" |