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@@ -10,4 +10,5 @@ CHANGELOG.md | |
^vignettes\figure$ | ||
docker | ||
CONTRIBUTING.md | ||
data-raw | ||
data-raw | ||
^\.circleci$ |
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version: 2 | ||
jobs: | ||
build: | ||
docker: | ||
- image: rocker/verse:4.0.3 | ||
environment: | ||
_R_CHECK_FORCE_SUGGESTS_: false | ||
steps: | ||
- checkout | ||
- run: | ||
name: Install package dependencies | ||
command: R -e "devtools::install_deps(dep = TRUE)" | ||
- run: | ||
name: Build package | ||
command: R CMD build . | ||
- run: | ||
name: Check package | ||
command: R CMD check --no-manual *tar.gz | ||
- store_test_results: | ||
path: tmp/tests |
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@@ -3,3 +3,4 @@ | |
.RData | ||
.Ruserdata | ||
conos*.tar.gz | ||
conos*Rcheck |
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Package: conos | ||
Title: Clustering on Network of Samples | ||
Version: 1.4.3 | ||
Version: 1.4.4 | ||
Authors@R: c(person("Viktor","Petukhov", email="[email protected]", role="aut"), person("Nikolas","Barkas", email="[email protected]", role="aut"), person("Peter", "Kharchenko", email = "[email protected]", role = "aut"), person("Weiliang", "Qiu", email = "[email protected]", role = c("ctb")), person("Evan", "Biederstedt", email="[email protected]", role=c("aut", "cre"))) | ||
Description: Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB. | ||
License: GPL-3 | ||
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@@ -30,11 +30,11 @@ Imports: | |
reshape2, | ||
rlang, | ||
Rtsne, | ||
sccore (> 0.1.2), | ||
sccore (>= 1.0.0), | ||
stats, | ||
tools, | ||
utils | ||
RoxygenNote: 7.1.1 | ||
RoxygenNote: 7.1.2 | ||
Suggests: | ||
AnnotationDbi, | ||
BiocParallel, | ||
|
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