Merge branch 'devel'

kharchenkolab · Nov 17, 2021 · df560c9 · df560c9
2 parents 9bc9bb2 + 2b06932
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diff --git a/doc/pagoda2.walkthrough.Rmd b/doc/pagoda2.walkthrough.Rmd
@@ -389,7 +389,7 @@ This app will now be viewable as long as our R session is running. However we al
 
 Users may also interactively explore [Conos](https://github.com/kharchenkolab/conos) objects with the Pagoda2 application.
 
-After constructing the Conos object `con` as shown in the Conos [walkthrough](https://github.com/kharchenkolab/conos/blob/master/doc/walkthrough.md), users can save to a serialized `*.bin` file and upload into the pagoda application with the `p2app4conos()` function, using `p2app4conos(conos=con)`. Please see Conos for more details.
+After constructing the Conos object `con` as shown in the Conos [walkthrough](https://github.com/kharchenkolab/conos/blob/main/doc/walkthrough.md), users can save to a serialized `*.bin` file and upload into the pagoda application with the `p2app4conos()` function, using `p2app4conos(conos=con)`. Please see Conos for more details.
 
 ### More Details
 

diff --git a/doc/pagoda2.walkthrough.html b/doc/pagoda2.walkthrough.html
@@ -724,7 +724,7 @@ <h3>View Conos Object in Pagoda2 Frontend Application</h3>
 
 <p>Users may also interactively explore <a href="https://github.com/kharchenkolab/conos">Conos</a> objects with the Pagoda2 application.</p>
 
-<p>After constructing the Conos object <code>con</code> as shown in the Conos <a href="https://github.com/kharchenkolab/conos/blob/master/doc/walkthrough.md">walkthrough</a>, users can save to a serialized <code>*.bin</code> file and upload into the pagoda application with the <code>p2app4conos()</code> function, using <code>p2app4conos(conos=con)</code>. Please see Conos for more details.</p>
+<p>After constructing the Conos object <code>con</code> as shown in the Conos <a href="https://github.com/kharchenkolab/conos/blob/main/doc/walkthrough.md">walkthrough</a>, users can save to a serialized <code>*.bin</code> file and upload into the pagoda application with the <code>p2app4conos()</code> function, using <code>p2app4conos(conos=con)</code>. Please see Conos for more details.</p>
 
 <h3>More Details</h3>
 

diff --git a/doc/pagoda2.walkthrough.md b/doc/pagoda2.walkthrough.md
@@ -623,7 +623,7 @@ This app will now be viewable as long as our R session is running. However we al
 
 Users may also interactively explore [Conos](https://github.com/kharchenkolab/conos) objects with the Pagoda2 application.
 
-After constructing the Conos object `con` as shown in the Conos [walkthrough](https://github.com/kharchenkolab/conos/blob/master/doc/walkthrough.md), users can save to a serialized `*.bin` file and upload into the pagoda application with the `p2app4conos()` function, using `p2app4conos(conos=con)`. Please see Conos for more details.
+After constructing the Conos object `con` as shown in the Conos [walkthrough](https://github.com/kharchenkolab/conos/blob/main/doc/walkthrough.md), users can save to a serialized `*.bin` file and upload into the pagoda application with the `p2app4conos()` function, using `p2app4conos(conos=con)`. Please see Conos for more details.
 
 ### More Details