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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,49 +1,32 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| - master | ||
| branches: [main, master] | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| - master | ||
| branches: [main, master] | ||
|
|
||
| name: lint | ||
|
|
||
| jobs: | ||
| lint: | ||
| runs-on: macOS-latest | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: actions/checkout@v4 | ||
|
|
||
| - uses: r-lib/actions/setup-r@v1 | ||
|
|
||
| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Restore R package cache | ||
| uses: actions/cache@v2 | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
| use-public-rspm: true | ||
|
|
||
| - name: Install dependencies | ||
| run: | | ||
| install.packages(c("remotes")) | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran("lintr") | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Install package | ||
| run: R CMD INSTALL . | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::lintr, local::. | ||
| needs: lint | ||
|
|
||
| - name: Lint | ||
| run: lintr::lint_package() | ||
| shell: Rscript {0} | ||
| env: | ||
| LINTR_ERROR_ON_LINT: true |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,102 @@ | ||
| # R-hub's generic GitHub Actions workflow file. It's canonical location is at | ||
| # https://github.com/r-hub/actions/blob/v1/workflows/rhub.yaml | ||
| # You can update this file to a newer version using the rhub2 package: | ||
| # | ||
| # rhub::rhub_setup() | ||
| # | ||
| # It is unlikely that you need to modify this file manually. | ||
|
|
||
| name: R-hub | ||
| run-name: "${{ github.event.inputs.id }}: ${{ github.event.inputs.name || format('Manually run by {0}', github.triggering_actor) }}" | ||
|
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||
| on: | ||
| workflow_dispatch: | ||
| inputs: | ||
| config: | ||
| description: 'A comma separated list of R-hub platforms to use.' | ||
| type: string | ||
| default: 'linux,windows,macos' | ||
| name: | ||
| description: 'Run name. You can leave this empty now.' | ||
| type: string | ||
| id: | ||
| description: 'Unique ID. You can leave this empty now.' | ||
| type: string | ||
|
|
||
| jobs: | ||
|
|
||
| setup: | ||
| runs-on: ubuntu-latest | ||
| outputs: | ||
| containers: ${{ steps.rhub-setup.outputs.containers }} | ||
| platforms: ${{ steps.rhub-setup.outputs.platforms }} | ||
|
|
||
| steps: | ||
| # NO NEED TO CHECKOUT HERE | ||
| - uses: r-hub/actions/setup@v1 | ||
| with: | ||
| config: ${{ github.event.inputs.config }} | ||
| id: rhub-setup | ||
|
|
||
| linux-containers: | ||
| needs: setup | ||
| if: ${{ needs.setup.outputs.containers != '[]' }} | ||
| runs-on: ubuntu-latest | ||
| name: ${{ matrix.config.label }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: ${{ fromJson(needs.setup.outputs.containers) }} | ||
| container: | ||
| image: ${{ matrix.config.container }} | ||
|
|
||
| steps: | ||
| - uses: r-hub/actions/checkout@v1 | ||
| - uses: r-hub/actions/platform-info@v1 | ||
| with: | ||
| token: ${{ secrets.RHUB_TOKEN }} | ||
| job-config: ${{ matrix.config.job-config }} | ||
| - uses: r-hub/actions/setup-deps@v1 | ||
| with: | ||
| token: ${{ secrets.RHUB_TOKEN }} | ||
| job-config: ${{ matrix.config.job-config }} | ||
| - uses: r-hub/actions/run-check@v1 | ||
| with: | ||
| token: ${{ secrets.RHUB_TOKEN }} | ||
| job-config: ${{ matrix.config.job-config }} | ||
|
|
||
|
|
||
|
|
||
| other-platforms: | ||
| needs: setup | ||
| if: ${{ needs.setup.outputs.platforms != '[]' }} | ||
| runs-on: ${{ matrix.config.os }} | ||
| name: ${{ matrix.config.label }} | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
| config: ${{ fromJson(needs.setup.outputs.platforms) }} | ||
|
|
||
| steps: | ||
| ## MK: added. Pandoc for rmd | ||
| - uses: teatimeguest/setup-texlive-action@v3 | ||
| with: | ||
| packages: scheme-basic | ||
| - uses: r-lib/actions/setup-pandoc@v2 | ||
| - uses: r-hub/actions/checkout@v1 | ||
| - uses: r-hub/actions/setup-r@v1 | ||
| with: | ||
| job-config: ${{ matrix.config.job-config }} | ||
| token: ${{ secrets.RHUB_TOKEN }} | ||
| - uses: r-hub/actions/platform-info@v1 | ||
| with: | ||
| token: ${{ secrets.RHUB_TOKEN }} | ||
| job-config: ${{ matrix.config.job-config }} | ||
| - uses: r-hub/actions/setup-deps@v1 | ||
| with: | ||
| job-config: ${{ matrix.config.job-config }} | ||
| token: ${{ secrets.RHUB_TOKEN }} | ||
| - uses: r-hub/actions/run-check@v1 | ||
| with: | ||
| job-config: ${{ matrix.config.job-config }} | ||
| token: ${{ secrets.RHUB_TOKEN }} |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,48 +1,61 @@ | ||
| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: | ||
| - main | ||
| - master | ||
| branches: [main, master] | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| - master | ||
| branches: [main, master] | ||
|
|
||
| name: test-coverage | ||
|
|
||
| permissions: read-all | ||
|
|
||
| jobs: | ||
| test-coverage: | ||
| runs-on: macOS-latest | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
|
|
||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: actions/checkout@v4 | ||
|
|
||
| - uses: r-lib/actions/setup-r@v1 | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
|
|
||
| - uses: r-lib/actions/setup-pandoc@v1 | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::covr, any::xml2 | ||
| needs: coverage | ||
|
|
||
| - name: Query dependencies | ||
| - name: Test coverage | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| cov <- covr::package_coverage( | ||
| quiet = FALSE, | ||
| clean = FALSE, | ||
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") | ||
| ) | ||
| covr::to_cobertura(cov) | ||
| shell: Rscript {0} | ||
|
|
||
| - name: Restore R package cache | ||
| uses: actions/cache@v2 | ||
| - uses: codecov/codecov-action@v4 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
|
|
||
| - name: Install dependencies | ||
| fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} | ||
| file: ./cobertura.xml | ||
| plugin: noop | ||
| disable_search: true | ||
| token: ${{ secrets.CODECOV_TOKEN }} | ||
|
|
||
| - name: Show testthat output | ||
| if: always() | ||
| run: | | ||
| install.packages(c("remotes")) | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran("covr") | ||
| shell: Rscript {0} | ||
| ## -------------------------------------------------------------------- | ||
| find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
| shell: bash | ||
|
|
||
| - name: Test coverage | ||
| run: covr::codecov() | ||
| shell: Rscript {0} | ||
| - name: Upload test results | ||
| if: failure() | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: coverage-test-failures | ||
| path: ${{ runner.temp }}/package |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1 +1,7 @@ | ||
| linters: with_defaults(line_length_linter(80), commented_code_linter=NULL, infix_spaces_linter=NULL, object_name_linter = NULL, spaces_left_parentheses_linter=NULL) | ||
| linters: linters_with_defaults( | ||
| line_length_linter(80), | ||
| infix_spaces_linter=NULL, | ||
| commented_code_linter=NULL, | ||
| object_name_linter(c("CamelCase", "camelCase", "dotted.case", "snake_case")), | ||
| indentation_linter(indent=4L) | ||
| ) |
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